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[183409_at]

Description K10D11.6 /REP_DB=WormBase Gene ID /WP=CE16243 /TR=O17949 /GB=CAB03525.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 41      4grp_high_8_8 > 0      6grp_total > 52      4grp_total > 63      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 121
1 2 3 4 range
A 143.6
(1)
P 		170.8
(3)
A 		135
(0.4)
P 		88
(-3)
M 		83
B 172.1
(2.9)
P 		121
(-3)
P 		172.9
(3)
P 		154.3
(0.8)
P 		52
C 178.2
(3)
P 		56.8
(-3)
P 		129.5
(0.6)
P 		97.4
(-1)
A 		121
avr 164.6
(3) 		116.2
(-2.6) 		145.8
(0.8) 		113.2
(-3) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 211
1 2 3 4 5 6 range
A 143.9
(0.6)
A 		124
(-0.4)
P 		192.5
(3)
P 		126.2
(-0.3)
P 		156.6
(1.2)
P 		71.9
(-3)
A 		121
B 118.3
(-1.9)
P 		159.5
(-0.7)
P 		283.3
(3)
P 		126.7
(-1.6)
P 		118.2
(-1.9)
P 		80.6
(-3)
P 		203
C 116.9
(-0.8)
P 		187.9
(3)
P 		181.2
(2.6)
P 		165.6
(1.8)
P 		76
(-3)
P 		79.7
(-2.8)
A 		112
avr 126.4
(-0.9) 		157.1
(0.4) 		219
(3) 		139.5
(-0.4) 		116.9
(-1.3) 		77.4
(-3) 		142
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 52.3
(3)
P 		37.1
(0.7)
A 		35.3
(0.4)
P 		12.9
(-3)
M 		39
B 54.9
(3)
P 		29.9
(-3)
P 		40.1
(-0.6)
P 		32.9
(-2.3)
P 		25
C 59
(3)
P 		16.3
(-3)
P 		45.1
(1)
P 		16.4
(-3)
A 		43
avr 55.4
(3) 		27.8
(-1.8) 		40.2
(0.4) 		20.7
(-3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 26.5
(-1.2)
A 		44.1
(2.4)
P 		41.9
(1.9)
P 		32
(-0.1)
P 		47.3
(3)
P 		17.5
(-3)
A 		30
B 41.2
(-1.3)
P 		53.1
(0.6)
P 		68.8
(3)
P 		33.6
(-2.5)
P 		48
(-0.2)
P 		30.1
(-3)
P 		39
C 43.3
(0.4)
P 		57.3
(3)
P 		46.1
(0.9)
P 		33.3
(-1.4)
P 		24.6
(-3)
P 		26.7
(-2.6)
A 		33
avr 37
(-0.3) 		51.5
(2.8) 		52.3
(3) 		33
(-1.2) 		40
(0.3) 		24.8
(-3) 		28
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183409_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9947
Sequence Type Exemplar sequence
Representative Public ID K10D11.6 NCBI
Target Description K10D11.6 /REP_DB=WormBase Gene ID /WP=CE16243 /TR=O17949 /GB=CAB03525.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070088(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070088 NCBI Caenorhabditis elegans K10D11.6 (K10D11.6) mRNA, complete cds. 11/11 None
GENEFINDER00000011406 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12982177:12989335:-1 11/11 None
K10D11.6 ENSEMBL cdna:known chromosome:CEL140:IV:12986721:12989403:-1 gene:K10D11.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000011398 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12986806-12989341(-) 99.07 100.0
Public Domain and Genome References
Gene Title
Ensembl K10D11.6
Entrez Gene 178249 Entrez gene
SwissProt O17949 EMBL-EBI
WormBase CE16243 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03525 Hypothetical protein K10D11.6 [Caenorhabditis elegans] ref|NP_502489.1| K10D11.6 [Caenorhabditis elegans] 0.0
blast CAB03522 Hypothetical protein K10D11.3 [Caenorhabditis elegans] ref|NP_502488.2| K10D11.3 [Caenorhabditis elegans] 0.0
blast CAB03522 Hypothetical protein K10D11.3 [Caenorhabditis elegans] ref|NP_502488.2| K10D11.3 [Caenorhabditis elegans] 1.0E-157
blast CAB05319 Hypothetical protein ZK896.4 [Caenorhabditis elegans] ref|NP_502454.1| ZK896.4 [Caenorhabditis elegans] 2.0E-57
blast CAB05319 Hypothetical protein ZK896.4 [Caenorhabditis elegans] ref|NP_502454.1| ZK896.4 [Caenorhabditis elegans] 2.0E-52
Protein Domains
Database ID Description E-Value
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 4.4E-37
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 9.4E-8
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 1.8E-13
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 8.3E-48
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000011406 2 326-348,511-530
Sequence
Target Sequence 
>C. ELEGANS:183409_AT
caaacggctggatctcagcccaggttctatcctgaaaatttattgtggggccaagaaaga
ggatgatgattcaaatctaattgtcacttataatgccgaacaatcaaagacaaatattcc
acaaaagttctacggcgacattatgacttattatttggcaaatggaactgcactcgttga
gcttgcagaggactcgaactacacaagatggaatgatgcatcaagtggaagggaaggatt
tatgagttccagaaagtttggagaactcgagttttatcaagatgtctatgaagaaattgg
aggtttttatttaaattcaacatttcaatttgaagttaacgtgacccacctagacgtttc
aaatgtagctgtgttgacattaacttttggaaacgaaactggaagtcctactattcatca
aatctcaaattcgaccaattttcaactgggacaagttattgaagcagtcggaagaaatat
gaccgtatcgtattttacaaatggcacagcgactaatggttttttct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAACGGCTGGATCTCAGCCCAGGT 494 191 894 Antisense
ATCTCAGCCCAGGTTCTATCCTGAA 547 31 905 Antisense
ATTCCACAAAAGTTCTACGGCGACA 214 5 1009 Antisense
GCGACATTATGACTTATTATTTGGC 176 289 1028 Antisense
ATGGAACTGCACTCGTTGAGCTTGC 449 51 1055 Antisense
GAGCTTGCAGAGGACTCGAACTACA 261 389 1072 Antisense
GAACTCGAGTTTTATCAAGATGTCT 557 349 1156 Antisense
GAAGTTAACGTGACCCACCTAGACG 506 335 1225 Antisense
GACCCACCTAGACGTTTCAAATGTA 94 381 1236 Antisense
GAAGTCCTACTATTCATCAAATCTC 534 335 1295 Antisense
GGCACAGCGACTAATGGTTTTTTCT 284 533 1396 Antisense
Sequence Source Affymetrix Proprietary Database