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[183408_at]

Description W01C8.5 /REP_DB=WormBase Gene ID /WP=CE26751 /TR=Q9GYG5 /GB=AAG00025.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 16      6grp_high1_10_10 > 51      4grp_highest_8_8 > 04      4grp_high_8_8 > 38      6grp_highest_nonorm > 43      6grp_total > 30      4grp_total > 33      6grp_highest_sub > 03_04      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 446
1 2 3 4 range
A 315.6
(-3)
P 		620
(2.4)
P 		641.6
(2.8)
P 		653.8
(3)
P 		338
B 327.5
(-3)
P 		616.6
(3)
P 		615.3
(3)
P 		597.4
(2.6)
P 		289
C 385
(-3)
P 		746.9
(2.8)
P 		668.2
(1.5)
P 		761.4
(3)
P 		376
avr 342.7
(-3) 		661.2
(2.8) 		641.7
(2.5) 		670.9
(3) 		328

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1324
1 2 3 4 5 6 range
A 619.4
(-1.5)
P 		1146.2
(2.2)
P 		1253.5
(3)
P 		1147.8
(2.2)
P 		724.3
(-0.8)
P 		411.8
(-3)
P 		842
B 759.5
(-1.3)
P 		1157.1
(0.9)
P 		1550.8
(3)
P 		1175.9
(1)
P 		699.5
(-1.6)
P 		438.7
(-3)
P 		1112
C 688.6
(-2.3)
P 		1109.8
(-0.2)
P 		1216.9
(0.4)
P 		1735.7
(3)
P 		648.6
(-2.5)
P 		555
(-3)
P 		1181
avr 689.2
(-1.5) 		1137.7
(1.5) 		1340.4
(2.9) 		1353.1
(3) 		690.8
(-1.5) 		468.5
(-3) 		885
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 137
1 2 3 4 range
A 114.9
(-1.4)
P 		134.6
(0.2)
P 		167.7
(3)
P 		95.7
(-3)
P 		72
B 104.4
(-3)
P 		152.3
(3)
P 		142.6
(1.8)
P 		127.3
(-0.1)
P 		48
C 127.5
(-3)
P 		214.7
(2)
P 		232.9
(3)
P 		128.4
(-2.9)
P 		105
avr 115.6
(-3) 		167.2
(1.7) 		181.1
(3) 		117.1
(-2.9) 		66

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 307
1 2 3 4 5 6 range
A 114.2
(-2.7)
P 		407.6
(3)
P 		273
(0.4)
P 		291.1
(0.7)
P 		218.6
(-0.7)
P 		100.3
(-3)
P 		307
B 264.3
(-0.3)
P 		385.2
(3)
P 		376.6
(2.8)
P 		311.4
(1)
P 		284.2
(0.3)
P 		163.6
(-3)
P 		222
C 255.2
(-0.5)
P 		338.6
(2.6)
P 		309.7
(1.6)
P 		349.1
(3)
P 		209.9
(-2.1)
P 		185.8
(-3)
P 		163
avr 211.2
(-1.4) 		377.1
(3) 		319.8
(1.5) 		317.2
(1.4) 		237.6
(-0.7) 		149.9
(-3) 		227
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183408_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16673
Sequence Type Exemplar sequence
Representative Public ID W01C8.5 NCBI
Target Description W01C8.5 /REP_DB=WormBase Gene ID /WP=CE26751 /TR=Q9GYG5 /GB=AAG00025.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076558(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076558 NCBI Caenorhabditis elegans W01C8.5 (W01C8.5) mRNA, complete cds. 10/11 A 
GENEFINDER00000032383 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:5693773:5697257:-1 11/11 None
SNAP00000032379 ENSEMBL cdna:SNAP chromosome:CEL140:X:5694791:5697257:-1 10/11 None
W01C8.5 ENSEMBL cdna:known chromosome:CEL140:X:5694432:5697266:-1 gene:W01C8.5 10/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5694565-5697257(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W01C8.5
Entrez Gene 180836 Entrez gene
SwissProt Q9GYG5 EMBL-EBI
WormBase CE26751 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1624121_AT knickkopf dm
DROSGENOME1:149617_AT knickkopf dm
Protein Similarities
Method ID Description E-Value
blast NP_508959 W01C8.5 [Caenorhabditis elegans] gb|AAG49388.1| XG314 [Caenorhabditis elegans] gb|AAG00025.2| Hypothetical protein W01C8.5 [Caenorhabditis elegans] 0.0
blast CAE68788 Hypothetical protein CBG14733 [Caenorhabditis briggsae] 0.0
blast T26047 hypothetical protein W01C8.5 - Caenorhabditis elegans 0.0
blast T26047 hypothetical protein W01C8.5 - Caenorhabditis elegans 1.0E-168
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000032383 1 564-586
Sequence
Target Sequence 
>C. ELEGANS:183408_AT
ctgaactctacaatccactttacattggagacgatgaaaatggagggttcagcgaacttt
ctcaaaatgaggctgaaagagtgaccattcattctccaggactaattgagagcaacactg
gaccactttgtatttggatgcacaacaaagacaaagctgcaaatgaaccagatacatatt
tggagtgtgatggatggccggaagatgttcattcgtttgcatttacccccaatgagacaa
ccccatctgttctttattacaacagtggaaacaacttcaacatgggtggcagaattttca
tcgttgacgagctccctgaaaatatagccgatagtgcggaagtaccgtatagccgcgaga
aatggcacactttggctctaagccgtcagcgagccgacaaggtcaatggaggaaaggcga
ctcttgccgcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTGAACTCTACAATCCACTTTACAT 536 237 1292 Antisense
GGAGGGTTCAGCGAACTTTCTCAAA 380 515 1333 Antisense
GAGAGCAACACTGGACCACTTTGTA 384 393 1399 Antisense
ATGTTCATTCGTTTGCATTTACCCC 427 47 1496 Antisense
CAATGAGACAACCCCATCTGTTCTT 153 183 1521 Antisense
GGGTGGCAGAATTTTCATCGTTGAC 255 497 1575 Antisense
ATCGTTGACGAGCTCCCTGAAAATA 452 35 1591 Antisense
GGAAGTACCGTATAGCCGCGAGAAA 426 527 1629 Antisense
ATGGCACACTTTGGCTCTAAGCCGT 528 51 1653 Antisense
CCGTCAGCGAGCCGACAAGGTCAAT 434 263 1674 Antisense
GGAGGAAAGGCGACTCTTGCCGCCA 448 513 1699 Antisense
Sequence Source Affymetrix Proprietary Database