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[183407_at]

Description F40H3.3 /REP_DB=WormBase Gene ID /WP=CE19864 /TR=Q9TZK4 /GB=AAC67428.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 84      4grp_total > 42      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 3.2
(-3)
A 		51.4
(3)
A 		12.3
(-1.9)
A 		4.8
(-2.8)
A 		48
B 4.6
(-3)
A 		30.6
(0.2)
A 		53.2
(3)
A 		6.4
(-2.8)
A 		49
C 47.9
(2.2)
A 		35.3
(-0.5)
A 		23.6
(-3)
A 		51.9
(3)
A 		28
avr 18.6
(-3) 		39.1
(3) 		29.7
(0.2) 		21
(-2.3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 23.7
(-3)
A 		36.1
(-1.1)
A 		60.7
(2.6)
P 		58.4
(2.2)
P 		41.8
(-0.3)
A 		63.7
(3)
A 		40
B 30.1
(-0.5)
A 		19.5
(-1.7)
A 		8.1
(-3)
A 		60
(3)
P 		46.4
(1.4)
P 		10.2
(-2.8)
A 		52
C 5.4
(-2.8)
A 		3.1
(-3)
A 		38
(0.7)
A 		52.8
(2.2)
A 		60.1
(3)
P 		35.7
(0.4)
P 		57
avr 19.7
(-3) 		19.6
(-3) 		35.6
(-0.4) 		57.1
(3) 		49.4
(1.8) 		36.5
(-0.3) 		38
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 1.2
(-2.7)
A 		11.2
(3)
A 		3.2
(-1.6)
A 		0.7
(-3)
A 		11
B 1.5
(-2.9)
A 		7.5
(0.4)
A 		12.3
(3)
A 		1.4
(-3)
A 		11
C 15.9
(3)
A 		10.1
(-1.5)
A 		8.2
(-3)
A 		8.7
(-2.6)
A 		8
avr 6.2
(-0.4) 		9.6
(3) 		7.9
(1.3) 		3.6
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 4.4
(-3)
A 		12.8
(1.5)
A 		13.2
(1.8)
P 		14.8
(2.6)
P 		12.6
(1.4)
A 		15.5
(3)
A 		11
B 10.5
(0)
A 		6.5
(-1.4)
A 		2
(-3)
A 		15.9
(2)
P 		18.8
(3)
P 		3.8
(-2.4)
A 		17
C 2
(-2.7)
A 		1
(-3)
A 		9.7
(-0.2)
A 		10.6
(0.1)
A 		19.4
(3)
P 		11.9
(0.6)
P 		18
avr 5.6
(-3) 		6.8
(-2.4) 		8.3
(-1.6) 		13.8
(1.4) 		16.9
(3) 		10.4
(-0.5) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183407_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4220
Sequence Type Exemplar sequence
Representative Public ID F40H3.3 NCBI
Target Description F40H3.3 /REP_DB=WormBase Gene ID /WP=CE19864 /TR=Q9TZK4 /GB=AAC67428.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062830(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062830 NCBI Caenorhabditis elegans F40H3.3 (F40H3.3) mRNA, complete cds. 11/11 None
GENEFINDER00000001579 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6171495:6172824:1 11/11 None
F40H3.3 ENSEMBL cdna:known chromosome:CEL140:II:6171495:6172824:1 gene:F40H3.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6171491-6172821(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F40H3.3
Entrez Gene 185572 Entrez gene
SwissProt Q9TZK4 EMBL-EBI
WormBase CE19864 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC67428 Hypothetical protein F40H3.3 [Caenorhabditis elegans] ref|NP_495231.1| F40H3.3 [Caenorhabditis elegans] 2.0E-77
blast CAE59256 Hypothetical protein CBG02584 [Caenorhabditis briggsae] 3.0E-65
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495231.1 1 7-29
F40H3.3 1 7-29
GENEFINDER00000001579 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:183407_AT
ctctgctcgtctctattatattaactgtaattccagcacaattcaatattccattaccgt
ttggtggtatttcattgaataaaaataaaaatggagagctggaaattggcggaaatcaaa
acttcaatttgtttggttggggagcaaatcgagacttcaaactgacgactggaaacggaa
cgttcaaattagataaaactgatgaagcaattctaaatgggtcaacttacggaggcagcg
gctcaattggtgttgatgaaaaaactggaatcgatattgggcagaatctgacacttgacg
acaaaaaattggtgggaggtcttgggaaagaaatgaactttttggaaagtcttgccgcac
ttttcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCTGCTCGTCTCTATTATATTAAC 629 231 32 Antisense
ATTCCAGCACAATTCAATATTCCAT 508 7 61 Antisense
CAATATTCCATTACCGTTTGGTGGT 425 179 75 Antisense
GGAGAGCTGGAAATTGGCGGAAATC 701 517 124 Antisense
GAGCAAATCGAGACTTCAAACTGAC 425 389 173 Antisense
CTGACGACTGGAAACGGAACGTTCA 423 227 193 Antisense
GAAGCAATTCTAAATGGGTCAACTT 249 339 235 Antisense
TGGGTCAACTTACGGAGGCAGCGGC 550 541 249 Antisense
AGGCAGCGGCTCAATTGGTGTTGAT 699 53 264 Antisense
GGGCAGAATCTGACACTTGACGACA 102 493 310 Antisense
TGGAAAGTCTTGCCGCACTTTTCAA 451 547 374 Antisense
Sequence Source Affymetrix Proprietary Database