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[183406_at]

Description Y70C5C.3 /REP_DB=WormBase Gene ID /WP=CE16675 /TR=O62497 /GB=CAB16535.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 43      4grp_total > 50      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 4.4
(-3)
A 		25
(3)
A 		13.3
(-0.4)
A 		14.5
(-0.1)
A 		21
B 9.5
(3)
A 		5.9
(0.2)
A 		4
(-1.2)
A 		1.7
(-3)
A 		8
C 6.3
(-0.1)
A 		9.2
(1.9)
A 		10.8
(3)
A 		2.1
(-3)
A 		9
avr 6.7
(-2.5) 		13.4
(3) 		9.4
(-0.3) 		6.1
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 9.2
(3)
A 		9.1
(2.9)
A 		7.4
(1.3)
A 		2.7
(-3)
A 		8.6
(2.4)
A 		8.3
(2.2)
A 		7
B 3.4
(-3)
A 		22.6
(3)
A 		9.5
(-1.1)
A 		10.4
(-0.8)
A 		4.9
(-2.5)
A 		5.2
(-2.4)
A 		19
C 9.3
(-2.4)
A 		5.9
(-2.8)
A 		50.7
(3)
A 		7.7
(-2.6)
A 		8.2
(-2.5)
A 		4.6
(-3)
A 		46
avr 7.3
(-2.5) 		12.5
(-0.6) 		22.5
(3) 		6.9
(-2.7) 		7.2
(-2.6) 		6
(-3) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 1.6
(-3)
A 		5.4
(3)
A 		3.5
(-0)
A 		2.1
(-2.2)
A 		4
B 3
(3)
A 		1.5
(-0.5)
A 		0.9
(-1.8)
A 		0.4
(-3)
A 		3
C 2.1
(0.1)
A 		2.6
(0.9)
A 		3.8
(3)
A 		0.3
(-3)
A 		4
avr 2.2
(0.4) 		3.2
(3) 		2.7
(1.7) 		0.9
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 1.7
(-0.6)
A 		3.2
(3)
A 		1.6
(-0.8)
A 		0.7
(-3)
A 		2.6
(1.6)
A 		2
(0.1)
A 		3
B 1.2
(-3)
A 		7.5
(3)
A 		2.3
(-2)
A 		2.7
(-1.6)
A 		2
(-2.2)
A 		1.9
(-2.3)
A 		6
C 3.4
(-2)
A 		1.8
(-2.9)
A 		12.9
(3)
A 		1.6
(-3)
A 		2.7
(-2.4)
A 		1.6
(-3)
A 		11
avr 2.1
(-2.4) 		4.2
(0.8) 		5.6
(3) 		1.7
(-3) 		2.4
(-1.9) 		1.8
(-2.8) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183406_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12983
Sequence Type Exemplar sequence
Representative Public ID Y70C5C.3 NCBI
Target Description Y70C5C.3 /REP_DB=WormBase Gene ID /WP=CE16675 /TR=O62497 /GB=CAB16535.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074827(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074827 NCBI Caenorhabditis elegans Y70C5C.3 (Y70C5C.3) mRNA, complete cds. 11/11 None
SNAP00000034982 ENSEMBL cdna:SNAP chromosome:CEL140:V:16716030:16717701:-1 11/11 None
GENEFINDER00000034989 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16715235:16717776:-1 11/11 None
Y70C5C.3 ENSEMBL cdna:known chromosome:CEL140:V:16716030:16717776:-1 gene:Y70C5C.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16716029-16717776(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y70C5C.3
Entrez Gene 190568 Entrez gene
SwissProt O62497 EMBL-EBI
WormBase CE16675 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4714 transmembrane receptor protein tyrosine kinase activity inferred from electronic annotation QuickGO AmiGO
5006 epidermal growth factor receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB16535 Hypothetical protein Y70C5C.3 [Caenorhabditis elegans] ref|NP_507228.1| Y70C5C.3 [Caenorhabditis elegans] 1.0E-136
blast CAB16535 Hypothetical protein Y70C5C.3 [Caenorhabditis elegans] ref|NP_507228.1| Y70C5C.3 [Caenorhabditis elegans] 1.0E-124
blast CAB16535 Hypothetical protein Y70C5C.3 [Caenorhabditis elegans] ref|NP_507228.1| Y70C5C.3 [Caenorhabditis elegans] 1.0E-122
blast AAC78169 Hypothetical protein K04F1.10 [Caenorhabditis elegans] ref|NP_503473.1| K04F1.10 [Caenorhabditis elegans] 1.0E-72
blast AAC78169 Hypothetical protein K04F1.10 [Caenorhabditis elegans] ref|NP_503473.1| K04F1.10 [Caenorhabditis elegans] 4.0E-57
blast AAC78169 Hypothetical protein K04F1.10 [Caenorhabditis elegans] ref|NP_503473.1| K04F1.10 [Caenorhabditis elegans] 1.0E-50
blast CAE62385 Hypothetical protein CBG06471 [Caenorhabditis briggsae] 4.0E-31
blast AAC78166 Hypothetical protein K04F1.7 [Caenorhabditis elegans] ref|NP_503476.1| K04F1.7 [Caenorhabditis elegans] 8.0E-30
Protein Domains
Database ID Description E-Value
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 4.8E-10
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 4.8E-10
Sequence
Target Sequence 
>C. ELEGANS:183406_AT
ctataacacgactttcacttcacttaactttcttgaaggtcttgaagaaatagaatgtga
acttctcatcacgcatgcctccctttccaaatcaatcgaattcggcgtctaccaggcatc
tccagaagcttgtatcaccatagaagaagcatcaaactttatcgtcaacagtaatttgta
tatgcgcactcttccaatcaactactgtcctgtcacttcaaatattatcgacggtgacaa
agtttgcgtgtttgaagatatgaacgttagaaatttggattctgactgcattcgagtcgt
tgggaatatctggataagtgatggagatgaggaacatgtccacaagttgaatccgttaaa
gattctttatggatcattgttaatcgataattcaagtttaacaaccgtcgacttcttgaa
tgaattggattatattgtgacactcgacagtcatcaaccgtta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTATAACACGACTTTCACTTCACTT 243 225 258 Antisense
ATGTGAACTTCTCATCACGCATGCC 82 49 312 Antisense
CCTCCCTTTCCAAATCAATCGAATT 193 267 335 Antisense
TCAATCGAATTCGGCGTCTACCAGG 264 633 349 Antisense
GGCATCTCCAGAAGCTTGTATCACC 251 537 372 Antisense
TTGTATATGCGCACTCTTCCAATCA 48 707 433 Antisense
ACTACTGTCCTGTCACTTCAAATAT 662 101 458 Antisense
GGATTCTGACTGCATTCGAGTCGTT 465 509 534 Antisense
GAACATGTCCACAAGTTGAATCCGT 113 351 589 Antisense
TTAACAACCGTCGACTTCTTGAATG 81 677 655 Antisense
GACACTCGACAGTCATCAACCGTTA 379 367 696 Antisense
Sequence Source Affymetrix Proprietary Database