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[183404_at]

Description F11A5.13 /REP_DB=WormBase Gene ID /WP=CE15791 /TR=O17783 /GB=CAB07351.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 43      4grp_total > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 103
1 2 3 4 range
A 31
(-1.8)
A 		11.5
(-3)
A 		21.1
(-2.4)
A 		109.2
(3)
A 		98
B 53
(0.8)
A 		19.5
(-3)
A 		32.1
(-1.6)
A 		72.6
(3)
A 		53
C 25.2
(-2.2)
A 		10.9
(-3)
A 		22.5
(-2.3)
A 		113.9
(3)
M 		103
avr 36.4
(-1.4) 		14
(-3) 		25.2
(-2.2) 		98.6
(3) 		85

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 14
(-1.9)
A 		26.5
(-0.4)
A 		55.1
(3)
P 		16.6
(-1.6)
A 		41.9
(1.4)
A 		4.6
(-3)
A 		51
B 55.6
(1.3)
A 		67.1
(3)
A 		60.6
(2)
A 		27.3
(-2.9)
A 		26.7
(-3)
A 		31.9
(-2.2)
A 		40
C 29.4
(-1.2)
A 		68.6
(3)
A 		59.1
(2)
A 		13
(-3)
A 		14.4
(-2.8)
A 		36.3
(-0.5)
A 		56
avr 33
(-0.9) 		54.1
(2.4) 		58.3
(3) 		19
(-3) 		27.7
(-1.7) 		24.3
(-2.2) 		39
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 11.3
(0.9)
A 		2.5
(-3)
A 		5.5
(-1.7)
A 		16
(3)
A 		14
B 16.9
(3)
A 		4.8
(-3)
A 		7.4
(-1.7)
A 		15.5
(2.3)
A 		12
C 8.3
(-1.1)
A 		3.1
(-3)
A 		7.8
(-1.2)
A 		19.2
(3)
M 		16
avr 12.2
(0.9) 		3.5
(-3) 		6.9
(-1.5) 		16.9
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 2.6
(-2.2)
A 		9.4
(1.3)
A 		12
(2.7)
P 		4.2
(-1.4)
A 		12.6
(3)
A 		1.1
(-3)
A 		12
B 19.4
(1.8)
A 		22.3
(3)
A 		14.7
(-0)
A 		7.2
(-3)
A 		10.8
(-1.6)
A 		11.9
(-1.1)
A 		15
C 10.9
(-0.3)
A 		20.9
(3)
A 		15
(1.1)
A 		2.6
(-3)
A 		4.6
(-2.3)
A 		12.2
(0.1)
A 		18
avr 11
(-0) 		17.5
(3) 		13.9
(1.3) 		4.7
(-3) 		9.3
(-0.8) 		8.4
(-1.3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183404_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12982
Sequence Type Exemplar sequence
Representative Public ID F11A5.13 NCBI
Target Description F11A5.13 /REP_DB=WormBase Gene ID /WP=CE15791 /TR=O17783 /GB=CAB07351.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074692(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074692 NCBI Caenorhabditis elegans F11A5.13 (F11A5.13) mRNA, complete cds. 11/11 None
F11A5.13 ENSEMBL cdna:known chromosome:CEL140:V:16228662:16229264:-1 gene:F11A5.13 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16228661-16229264(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F11A5.13
Entrez Gene 260097 Entrez gene
SwissProt O17783 EMBL-EBI
WormBase CE15791 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07351 Hypothetical protein F11A5.13 [Caenorhabditis elegans] ref|NP_507093.1| F11A5.13 [Caenorhabditis elegans] 1.0E-75
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507093.1 4 11-33,43-62,74-96,116-138
F11A5.13 4 11-33,43-62,74-96,116-138
Sequence
Target Sequence 
>C. ELEGANS:183404_AT
ggtgccatcgtattaatcgctttatatcatcgattattttgcttattgcctctctacttt
taataattctcggtttcattaatattttggacaaggacgaatttgataagacttttgtgc
catactggatgattattctagcctgccttacaatatccgatcaggttattttttggaaac
tggaaatggataaagatcagagatcactggtgctgctagcttttggagctgtaatgagag
ttggattagtttctttcacaatttgtttagtgacggccaagttgattgtattgaatgcaa
aaggtgatcttccaaatgttccggaaatatttaaattcggttttgcattaagcctagtaa
tcataagtgtgtacatttgtatttttacaaaatgtttggttaaagtctgcctggcacga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTGCCATCGTATTAATCGCTTTAT 2 503 23 Antisense
GATTATTTTGCTTATTGCCTCTCTA 648 429 54 Antisense
TGCCTCTCTACTTTTAATAATTCTC 6 587 69 Antisense
ATAAGACTTTTGTGCCATACTGGAT 436 25 128 Antisense
GATGATTATTCTAGCCTGCCTTACA 191 411 150 Antisense
GAGATCACTGGTGCTGCTAGCTTTT 303 395 222 Antisense
GTTGGATTAGTTTCTTTCACAATTT 312 437 262 Antisense
GTTTAGTGACGGCCAAGTTGATTGT 661 447 287 Antisense
AAAGGTGATCTTCCAAATGTTCCGG 313 121 322 Antisense
AATTCGGTTTTGCATTAAGCCTAGT 445 171 356 Antisense
TTTGGTTAAAGTCTGCCTGGCACGA 382 665 417 Antisense
Sequence Source Affymetrix Proprietary Database