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[183403_at]

Description Y39B6B.A /REP_DB=WormBase Gene ID /WP=CE24233 /TR=Q9NEV8 /GB=CAB60906.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 30      4grp_total > 35      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 1.4
(-3)
A 		19.7
(3)
A 		13.9
(1.1)
A 		19.8
(3)
A 		18
B 9.5
(-0.7)
A 		3.3
(-3)
A 		8.8
(-1)
A 		19.8
(3)
A 		17
C 22
(-1.4)
A 		67.9
(3)
P 		4.7
(-3)
A 		7.6
(-2.7)
A 		63
avr 11
(-2.5) 		30.3
(3) 		9.1
(-3) 		15.7
(-1.1) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 3.1
(-3)
A 		30.4
(2.5)
A 		33
(3)
A 		33
(3)
A 		18.7
(0.1)
A 		4.9
(-2.6)
A 		30
B 22.6
(1.6)
A 		27.2
(2.6)
A 		3.2
(-2.6)
A 		3.2
(-2.6)
A 		1.4
(-3)
A 		28.8
(3)
A 		27
C 28.4
(-1.6)
A 		24.5
(-2.7)
A 		23.5
(-3)
A 		44.1
(3)
A 		24.4
(-2.7)
A 		33.2
(-0.2)
A 		21
avr 18
(-1.5) 		27.4
(3) 		19.9
(-0.6) 		26.8
(2.7) 		14.8
(-3) 		22.3
(0.6) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 0.5
(-3)
A 		4.3
(3)
A 		3.6
(1.9)
A 		2.9
(0.8)
A 		4
B 3
(0.9)
A 		0.8
(-3)
A 		2
(-0.9)
A 		4.2
(3)
A 		3
C 7.3
(-1)
A 		19.5
(3)
P 		1.6
(-2.9)
A 		1.3
(-3)
A 		18
avr 3.6
(-1.8) 		8.2
(3) 		2.4
(-3) 		2.8
(-2.6) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 0.6
(-3)
A 		10.8
(3)
A 		7.2
(0.9)
A 		8.4
(1.6)
A 		5.6
(-0.1)
A 		1.2
(-2.6)
A 		10
B 7.9
(1.3)
A 		9
(1.9)
A 		0.8
(-2.9)
A 		0.9
(-2.8)
A 		0.6
(-3)
A 		10.8
(3)
A 		10
C 10.5
(2.3)
A 		7.5
(-1.2)
A 		6
(-3)
A 		8.9
(0.4)
A 		7.9
(-0.8)
A 		11.1
(3)
A 		5
avr 6.3
(-0.8) 		9.1
(3) 		4.7
(-3) 		6.1
(-1.1) 		4.7
(-3) 		7.7
(1.1) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183403_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19454
Sequence Type Exemplar sequence
Representative Public ID Y39B6B.A NCBI
Target Description Y39B6B.A /REP_DB=WormBase Gene ID /WP=CE24233 /TR=Q9NEV8 /GB=CAB60906.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171593(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171593 NCBI Caenorhabditis elegans Y39B6A.15 (Y39B6A.15) mRNA, complete cds. 11/11 None
GENEFINDER00000030706 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19105019:19120977:-1 11/11 None
Y39B6A.15 ENSEMBL cdna:known chromosome:CEL140:V:19105019:19111994:-1 gene:Y39B6A.15 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000030550 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19105018-19117241(-) 86.28 99.83
Public Domain and Genome References
Gene Title
Ensembl Y39B6A.15
Entrez Gene 3565226 Entrez gene
SwissProt Q8MYP2 EMBL-EBI
WormBase CE29857 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T45027 hypothetical protein Y39B6B.a [imported] - Caenorhabditis elegans 0.0
blast CAD31812 Hypothetical protein Y39B6A.14 [Caenorhabditis elegans] ref|NP_741684.1| Y39B6A.14 [Caenorhabditis elegans] 0.0
blast CAD31813 Hypothetical protein Y39B6A.15 [Caenorhabditis elegans] ref|NP_741683.1| Y39B6A.15 [Caenorhabditis elegans] 1.0E-163
blast CAD31813 Hypothetical protein Y39B6A.15 [Caenorhabditis elegans] ref|NP_741683.1| Y39B6A.15 [Caenorhabditis elegans] 1.0E-161
blast T45027 hypothetical protein Y39B6B.a [imported] - Caenorhabditis elegans 1.0E-157
blast CAE57005 Hypothetical protein CBG24874 [Caenorhabditis briggsae] 4.0E-22
Protein Domains
Database ID Description E-Value
Pfam IPR007949 EMBL-EBI SDA1 4.0E-8
Pfam IPR007949 EMBL-EBI SDA1 1.2E-36
Sequence
Target Sequence 
>C. ELEGANS:183403_AT
aagctcgagttaaaacgctcttcggatggattggctcgcctttcggatatcgaacatttc
tataagaaaaaacgacaatcaaaggaagaaagaatggctgatgtgatggctggacgtgct
gatgaggactacaaatttggaagacctaagaaaaatgtacaaattttggaaaaaccaccg
aattttaaagaaaatttcacaaaaaccagagaatttatgcagttcctgttgaaaattttg
gaaaaattgagaaattttcagagaaacactgaaaatttcgacgaaatacagcatttttgg
tctaaaatcccacacttttcgactgaaatatttaaatttctagctgaaaaagttcatttt
ttacgcgaaaaatcaaattttttagctaaaattttgggagcccacgtcggtcgtacaaat
gatcaaaattcgaagaaaaaggtgtttgcaatggtgaagaacaagattcgcggccgaaat
cgtcagagatcattccgtgatcaacagaaatcacttcgacactatttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGCTCGAGTTAAAACGCTCTTCGG 376 149 1810 Antisense
AACGCTCTTCGGATGGATTGGCTCG 229 145 1823 Antisense
TTGGCTCGCCTTTCGGATATCGAAC 351 709 1840 Antisense
TGGCTGATGTGATGGCTGGACGTGC 632 541 1904 Antisense
GGCTGGACGTGCTGATGAGGACTAC 244 541 1917 Antisense
CAGAGAATTTATGCAGTTCCTGTTG 19 207 2016 Antisense
GTCTAAAATCCCACACTTTTCGACT 451 469 2109 Antisense
AGCCCACGTCGGTCGTACAAATGAT 302 83 2208 Antisense
CAAGATTCGCGGCCGAAATCGTCAG 133 185 2271 Antisense
AAATCGTCAGAGATCATTCCGTGAT 176 119 2286 Antisense
ACAGAAATCACTTCGACACTATTTG 156 109 2313 Antisense
Sequence Source Affymetrix Proprietary Database