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[183402_at]

Description T10C6.10 /REP_DB=WormBase Gene ID /WP=CE16385 /TR=O45772 /GB=CAB07666.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 69      4grp_total > 03      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 101
1 2 3 4 range
A 16.9
(-3)
A 		25.8
(-2.4)
A 		32.5
(-2)
A 		110.6
(3)
A 		94
B 29.9
(-1.1)
A 		37.9
(0)
A 		16.1
(-3)
A 		59.3
(3)
A 		43
C 70.2
(-0.3)
A 		33.4
(-3)
A 		54.1
(-1.5)
A 		116.7
(3)
A 		83
avr 39
(-2.4) 		32.4
(-3) 		34.2
(-2.8) 		95.5
(3) 		63

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 21.5
(-2.1)
A 		12.8
(-3)
A 		43.4
(0)
A 		52.1
(0.9)
A 		29.9
(-1.3)
A 		73.3
(3)
A 		61
B 39.9
(0.6)
A 		55.3
(3)
A 		17.3
(-3)
A 		26.3
(-1.6)
A 		41.4
(0.8)
A 		48.5
(1.9)
A 		38
C 45.8
(2.4)
A 		34.9
(0.8)
A 		9.3
(-3)
A 		33.9
(0.6)
A 		46.2
(2.5)
A 		49.8
(3)
A 		41
avr 35.7
(-0.8) 		34.3
(-1.1) 		23.3
(-3) 		37.4
(-0.5) 		39.2
(-0.2) 		57.2
(3) 		34
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 6.2
(-2.7)
A 		5.6
(-3)
A 		8.5
(-1.4)
A 		16.2
(3)
A 		11
B 9.5
(0.9)
A 		9.4
(0.8)
A 		3.7
(-3)
A 		12.6
(3)
A 		9
C 23.3
(3)
A 		9.6
(-3)
A 		18.9
(1.1)
A 		19.7
(1.4)
A 		14
avr 13
(0.6) 		8.2
(-3) 		10.4
(-1.4) 		16.2
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 4
(-3)
A 		4.6
(-2.7)
A 		9.5
(-0.6)
A 		13.2
(1)
A 		9
(-0.8)
A 		17.9
(3)
A 		14
B 13.9
(1.1)
A 		18.4
(3)
A 		4.2
(-3)
A 		7
(-1.8)
A 		16.8
(2.3)
A 		18.1
(2.9)
A 		14
C 17
(3)
A 		10.6
(0.4)
A 		2.4
(-3)
A 		6.8
(-1.2)
A 		15
(2.2)
A 		16.7
(2.9)
A 		15
avr 11.6
(0) 		11.2
(-0.1) 		5.4
(-3) 		9
(-1.2) 		13.6
(1) 		17.6
(3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183402_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12880
Sequence Type Exemplar sequence
Representative Public ID T10C6.10 NCBI
Target Description T10C6.10 /REP_DB=WormBase Gene ID /WP=CE16385 /TR=O45772 /GB=CAB07666.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074629(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074629 NCBI Caenorhabditis elegans T10C6.10 (T10C6.10) mRNA, complete cds. 11/11 None
SNAP00000027913 ENSEMBL cdna:SNAP chromosome:CEL140:V:16039038:16040876:1 11/11 None
GENEFINDER00000027919 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16038912:16040876:1 11/11 None
T10C6.10 ENSEMBL cdna:known chromosome:CEL140:V:16039038:16040876:1 gene:T10C6.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16039037-16040876(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T10C6.10
Entrez Gene 180071 Entrez gene
SwissProt O45772 EMBL-EBI
WormBase CE16385 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07666 Hypothetical protein T10C6.10 [Caenorhabditis elegans] ref|NP_507030.1| T10C6.10 [Caenorhabditis elegans] 0.0
blast AAK68353 Hypothetical protein F29G9.7 [Caenorhabditis elegans] ref|NP_504562.2| F29G9.7 [Caenorhabditis elegans] 4.0E-82
blast CAA91469 Hypothetical protein F46C3.3 [Caenorhabditis elegans] ref|NP_509914.2| Heavy chain, Unconventional Myosin family member (hum-4) [Caenorhabditis elegans] 6.0E-69
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.5E-5
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.5E-5
Sequence
Target Sequence 
>C. ELEGANS:183402_AT
tcgttgagttttacttctccatacctctcttcgatctgactcagatctttgacctgaatc
gtgtgtgcatcatggatgcaagatgggtcacatttggatatgttatgggagcaaatttca
ctcggcttatgttgtcaaacactaagtgggatgtcgaaactgtgaaccagttcatctcgc
gttggttccgtgatggtcgatggccacatttggagagatttgagcttcacttcactcccg
attctcatggctgcttcaatccgacaatacttggatcgggttcgtatccgaagaaatgga
atcatcgacgctcatccctggattctacgagaagaagatattatgtaatggactgccatc
gggacccgtatctcctggacactaaaaacgatctcgacgtgacaagaggtgacggaaaaa
tcgcgacaattgtgaattcgcctcgagcatttttgttcctcgtctggcccgatcctcccg
ttgagcataaata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGTTGAGTTTTACTTCTCCATACC 615 603 635 Antisense
ACCTCTCTTCGATCTGACTCAGATC 690 87 657 Antisense
AACCAGTTCATCTCGCGTTGGTTCC 585 147 799 Antisense
GTTGGTTCCGTGATGGTCGATGGCC 405 435 815 Antisense
AGAGATTTGAGCTTCACTTCACTCC 695 67 848 Antisense
TCATGGCTGCTTCAATCCGACAATA 167 623 879 Antisense
CGCTCATCCCTGGATTCTACGAGAA 542 255 943 Antisense
ATGTAATGGACTGCCATCGGGACCC 111 47 977 Antisense
ACAATTGTGAATTCGCCTCGAGCAT 350 115 1060 Antisense
GCCTCGAGCATTTTTGTTCCTCGTC 268 281 1074 Antisense
CCGATCCTCCCGTTGAGCATAAATA 80 265 1103 Antisense
Sequence Source Affymetrix Proprietary Database