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[183400_at]

Description T07F10.2 /REP_DB=WormBase Gene ID /WP=CE21163 /TR=Q22320 /GB=CAB01245.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 80      4grp_total > 24      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 1.3
(-3)
A 		3.1
(-2.7)
A 		42.8
(3)
A 		40.2
(2.6)
A 		42
B 6.7
(-2.3)
A 		18.1
(3)
A 		15.3
(1.7)
A 		5.3
(-3)
A 		13
C 20.8
(-1.2)
A 		4.3
(-3)
A 		26.8
(-0.5)
A 		58.3
(3)
A 		54
avr 9.6
(-2.7) 		8.5
(-3) 		28.3
(1.6) 		34.6
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 6.8
(-2)
A 		1.5
(-3)
A 		3.1
(-2.7)
A 		32.8
(3)
A 		1.7
(-3)
A 		2.1
(-2.9)
A 		31
B 18
(3)
A 		9.6
(0)
A 		6.1
(-1.2)
A 		9.3
(-0.1)
A 		2.5
(-2.5)
A 		1.1
(-3)
A 		17
C 1.3
(-3)
A 		18.7
(1.1)
A 		9
(-1.2)
A 		26.6
(3)
A 		18.9
(1.2)
A 		10.3
(-0.9)
A 		25
avr 8.7
(-1.6) 		9.9
(-1.2) 		6.1
(-2.5) 		22.9
(3) 		7.7
(-2) 		4.5
(-3) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 0.5
(-3)
A 		0.7
(-2.9)
A 		11.2
(3)
A 		5.9
(0)
A 		11
B 2.1
(-1.2)
A 		4.5
(3)
A 		3.5
(1.2)
A 		1.1
(-3)
A 		3
C 6.9
(1)
A 		1.2
(-3)
A 		9.3
(2.7)
A 		9.8
(3)
A 		9
avr 3.2
(-1.9) 		2.1
(-3) 		8
(3) 		5.6
(0.6) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 1.3
(-2.4)
A 		0.5
(-3)
A 		0.7
(-2.8)
A 		8.3
(3)
A 		0.5
(-3)
A 		0.5
(-3)
A 		8
B 6.3
(3)
A 		3.2
(-0.2)
A 		1.5
(-1.9)
A 		2.5
(-0.9)
A 		1
(-2.4)
A 		0.4
(-3)
A 		6
C 0.5
(-3)
A 		5.7
(2.6)
A 		2.3
(-1.1)
A 		5.4
(2.3)
A 		6.1
(3)
A 		3.5
(0.2)
A 		6
avr 2.7
(-1.2) 		3.1
(-0.5) 		1.5
(-3) 		5.4
(3) 		2.5
(-1.5) 		1.5
(-3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183400_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14477
Sequence Type Exemplar sequence
Representative Public ID T07F10.2 NCBI
Target Description T07F10.2 /REP_DB=WormBase Gene ID /WP=CE21163 /TR=Q22320 /GB=CAB01245.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073819(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073819 NCBI Caenorhabditis elegans T07F10.2 (T07F10.2) mRNA, complete cds. 11/11 None
T07F10.2 ENSEMBL cdna:known chromosome:CEL140:V:12867648:12868683:1 gene:T07F10.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000002437 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:56834-58268(+) 93.03 93.03
chrV:12867647-12868683(+) 100.0 100.0
chrV:12376660-12377674(-) 94.16 94.16
chrX:4240050-4241063(-) 94.16 94.16
Public Domain and Genome References
Gene Title
Ensembl T07F10.2
Entrez Gene 188236 Entrez gene
SwissProt Q22320 EMBL-EBI
WormBase CE21163 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01245 Hypothetical protein T07F10.2 [Caenorhabditis elegans] ref|NP_506220.1| T07F10.2 [Caenorhabditis elegans] 1.0E-91
blast AAC17790 Hypothetical protein T24A6.2 [Caenorhabditis elegans] ref|NP_504000.1| T24A6.2 [Caenorhabditis elegans] 2.0E-22
Sequence
Target Sequence 
>C. ELEGANS:183400_AT
atgaccctcgtcgggcaagcaagatatcaaaaaattattaactacaaacttgttaatttt
gttatggaccatgtcttacgtttgaccattttggaagtattgactttctatgaacaagcc
aagttgagtgttgtatttttttgcccaggagatttttggaaaaacaattttatcaaaatt
attttcataaggggggacccttatgaaatttttgatatcagtggaaaatttttagcacaa
atcacatttccgactcagcgtgatttttgtttgttttttacgacttctaataaaagcgag
aaagaatttcaaaagaagctccaaactcagatggcaacgacattccgaactaacgtagcg
cgcactctttacccattttcgacgttgacacgaacgattgggatggcacgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGACCCTCGTCGGGCAAGCAAGAT 627 45 13 Antisense
ACTTGTTAATTTTGTTATGGACCAT 18 95 60 Antisense
ATGGACCATGTCTTACGTTTGACCA 6 51 76 Antisense
CATGTCTTACGTTTGACCATTTTGG 167 209 82 Antisense
TGACCATTTTGGAAGTATTGACTTT 30 571 95 Antisense
GTATTGACTTTCTATGAACAAGCCA 69 453 109 Antisense
GAACAAGCCAAGTTGAGTGTTGTAT 20 353 124 Antisense
GCCAAGTTGAGTGTTGTATTTTTTT 186 273 130 Antisense
GTGGAAAATTTTTAGCACAAATCAC 18 487 233 Antisense
ACGACATTCCGAACTAACGTAGCGC 644 91 349 Antisense
GACACGAACGATTGGGATGGCACGG 475 367 399 Antisense
Sequence Source Affymetrix Proprietary Database