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[183399_at]

Description Y39B6B.R /REP_DB=WormBase Gene ID /WP=CE21693 /TR=Q9NEU2 /GB=CAB60923.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 02      4grp_total > 20      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 163
1 2 3 4 range
A 71.4
(-2.4)
A 		92.3
(-1.5)
A 		57
(-3)
A 		194.9
(3)
A 		138
B 65.1
(2.6)
A 		67.6
(3)
A 		32.3
(-3)
A 		60.9
(1.9)
A 		35
C 86.8
(0.6)
A 		83.9
(0.3)
A 		53.1
(-3)
A 		108.6
(3)
A 		56
avr 74.4
(-0.8) 		81.3
(-0.3) 		47.5
(-3) 		121.5
(3) 		74

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 57.6
(3)
A 		42.9
(0)
A 		57.5
(3)
A 		54.4
(2.4)
A 		52.6
(2)
A 		27.9
(-3)
A 		30
B 75.8
(3)
A 		68
(1.6)
A 		46.8
(-2.2)
A 		53.3
(-1.1)
A 		62.1
(0.5)
A 		42.6
(-3)
A 		33
C 37.1
(-0.6)
A 		73.2
(3)
A 		12.5
(-3)
A 		44.2
(0.1)
A 		38.2
(-0.5)
A 		30.5
(-1.2)
A 		61
avr 56.8
(2) 		61.4
(3) 		38.9
(-1.9) 		50.6
(0.7) 		51
(0.7) 		33.7
(-3) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 26
(1.9)
A 		20
(-0.8)
A 		14.9
(-3)
A 		28.5
(3)
A 		14
B 20.7
(3)
A 		16.7
(1.2)
A 		7.5
(-3)
A 		13
(-0.5)
A 		13
C 28.7
(3)
A 		24.1
(0.3)
A 		18.5
(-2.9)
A 		18.3
(-3)
A 		10
avr 25.1
(3) 		20.3
(0.5) 		13.6
(-3) 		19.9
(0.3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 10.6
(-0.5)
A 		15.2
(2.5)
A 		12.5
(0.8)
A 		13.8
(1.6)
A 		15.9
(3)
A 		6.8
(-3)
A 		9
B 26.4
(3)
A 		22.6
(1.5)
A 		11.4
(-3)
A 		14.1
(-1.9)
A 		25.2
(2.5)
A 		15.9
(-1.2)
A 		15
C 13.8
(0.3)
A 		22.3
(3)
A 		3.2
(-3)
A 		8.9
(-1.2)
A 		12.3
(-0.1)
A 		10.2
(-0.8)
A 		19
avr 16.9
(1.3) 		20
(3) 		9
(-3) 		12.3
(-1.2) 		17.8
(1.8) 		11
(-1.9) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183399_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19451
Sequence Type Exemplar sequence
Representative Public ID Y39B6B.R NCBI
Target Description Y39B6B.R /REP_DB=WormBase Gene ID /WP=CE21693 /TR=Q9NEU2 /GB=CAB60923.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171594
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000030706 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19105019:19120977:-1 None
SNAP00000030550 ENSEMBL cdna:SNAP chromosome:CEL140:V:19101078:19120977:-1 None
NM_171594 NCBI Caenorhabditis elegans Y39B6A.14 (Y39B6A.14) mRNA, complete cds. None
Y39B6A.14 ENSEMBL cdna:known chromosome:CEL140:V:19113245:19120985:-1 gene:Y39B6A.14 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_171571 1/11 Cross Hyb Matching Probes A 
SNAP00000030529 1/11 Cross Hyb Matching Probes None
GENEFINDER00000030712 1/11 Cross Hyb Matching Probes None
Y39B6A.36 1/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19120199-19120977(-) 59.46 59.46
Public Domain and Genome References
Gene Title
Ensembl Y39B6A.14
Entrez Gene 180256 Entrez gene
SwissProt Q9NEU2 EMBL-EBI
WormBase CE29856 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:262766_AT SDA1 family protein at
ATGENOME1:17177_AT SDA1 family protein at
CANINE:1595672_AT similar to SDA1 domain containing 1 cfa
CANINE:1593387_AT similar to SDA1 domain containing 1 cfa
CANINE:1589849_S_AT similar to SDA1 domain containing 1 cfa
CANINE:1589848_AT similar to SDA1 domain containing 1 cfa
CANINE:1587740_AT similar to SDA1 domain containing 1 cfa
CANINE_2:CFA.9228.1.A1_AT similar to SDA1 domain containing 1 cfa
CANINE_2:CFA.9228.1.A1_S_AT similar to SDA1 domain containing 1 cfa
CANINE_2:CFAAFFX.13523.1.S1_AT similar to SDA1 domain containing 1 cfa
DROSOPHILA_2:1639288_AT Mystery 45A dm
DROSGENOME1:146866_AT Mystery 45A dm
CHICKEN:GGA.11702.1.S1_AT SDA1 domain containing 1 gga
CHICKEN:GGA.11702.2.S1_S_AT SDA1 domain containing 1 gga
HG-U133B:228408_S_AT SDA1 domain containing 1 hs
HG-U133_PLUS_2:228408_S_AT SDA1 domain containing 1 hs
HG-U133_PLUS_2:218607_S_AT SDA1 domain containing 1 hs
HG-U133A:218607_S_AT SDA1 domain containing 1 hs
HG-U133A_2:218607_S_AT SDA1 domain containing 1 hs
HU35KSUBA:AA282317_AT SDA1 domain containing 1 hs
HU35KSUBD:RC_AA282183_AT SDA1 domain containing 1 hs
U133_X3P:G8922466_3P_AT SDA1 domain containing 1 hs
U133_X3P:HS.109045.2.S1_3P_A_AT SDA1 domain containing 1 hs
HG-U95C:65118_AT SDA1 domain containing 1 hs
HG-U95E:76047_AT SDA1 domain containing 1 hs
HG-U95E:76477_AT SDA1 domain containing 1 hs
HG-U133_PLUS_2:242190_AT SDA1 domain containing 1 hs
HG-U133B:242190_AT SDA1 domain containing 1 hs
HU35KSUBD:RC_AA342968_AT SDA1 domain containing 1 hs
U133_X3P:HS.270107.0.A1_3P_AT SDA1 domain containing 1 hs
MG-U74BV2:111096_AT SDA1 domain containing 1 mm
MG-U74CV2:165965_AT SDA1 domain containing 1 mm
MOE430A:1452454_AT SDA1 domain containing 1 mm
MOUSE430A_2:1452454_AT SDA1 domain containing 1 mm
MOUSE430_2:1452454_AT SDA1 domain containing 1 mm
MOE430B:1437088_AT SDA1 domain containing 1 mm
MOUSE430_2:1437088_AT SDA1 domain containing 1 mm
RG-U34C:RC_AI178516_AT SDA1 domain containing 1 rn
RAE230A:1390704_AT SDA1 domain containing 1 rn
RAT230_2:1390704_AT SDA1 domain containing 1 rn
RAE230B:1382921_AT SDA1 domain containing 1 rn
RAT230_2:1382921_AT SDA1 domain containing 1 rn
YEAST_2:1779152_AT Highly conserved nuclear protein required for actin cytoskeleton organization and passage through Start, plays a critical role in G1 events, binds Nap1p, also involved in 60S ribosome biogenesis Sc
Protein Similarities
Method ID Description E-Value
blast CAD31812 Hypothetical protein Y39B6A.14 [Caenorhabditis elegans] ref|NP_741684.1| Y39B6A.14 [Caenorhabditis elegans] 0.0
blast T45027 hypothetical protein Y39B6B.a [imported] - Caenorhabditis elegans 0.0
blast CAE56026 Hypothetical protein CBG23585 [Caenorhabditis briggsae] 1.0E-166
Protein Domains
Database ID Description E-Value
Pfam IPR007949 EMBL-EBI SDA1 4.4E-25
Pfam IPR007949 EMBL-EBI SDA1 2.7E-39
Pfam IPR007949 EMBL-EBI SDA1 1.2E-36
Sequence
Target Sequence 
>C. ELEGANS:183399_AT
ctccgacggagggctccaattctggaaaagcttcacgcttcacaatgtccgaaaggaatt
tgggattgatgcaagaaattattcgaaaagatccggaatcctataaagaggaattcctcg
aacaattcaactatttcgttcaaacaatgaaacttctccacttgcaacccgaacaatctc
gtcaagaaatgcaatctctcgtcgattcggtgctttttctgtccggattggcgaaacatt
acccgaaagagtcgaaacaattctccgatagtctttttgagcttttgagagagcaaggag
ctggtttggatccagaatattttgagctgataacgaatttttgggcgctgcttagacaac
aaaaactacagtttatttcattaaaaactggtaaaaattctggaaattcgaatagaaacc
gatttttaaaacttcaagatcttcagcaactccttcaacaaccggtcagctacgtcaaag
aagtgctccaagagattgccgtctacaatactgctccaccgcacaagtctctgtggtgcc
tg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCCGACGGAGGGCTCCAATTCTGG 540 227 92 Antisense
CTTCACGCTTCACAATGTCCGAAAG 639 221 122 Antisense
CAATGAAACTTCTCCACTTGCAACC 346 183 236 Antisense
CTTGCAACCCGAACAATCTCGTCAA 150 219 252 Antisense
AAATGCAATCTCTCGTCGATTCGGT 238 119 278 Antisense
TCGATTCGGTGCTTTTTCTGTCCGG 534 603 293 Antisense
GGATTGGCGAAACATTACCCGAAAG 572 505 316 Antisense
AACAATTCTCCGATAGTCTTTTTGA 169 135 347 Antisense
GATAACGAATTTTTGGGCGCTGCTT 32 423 420 Antisense
AAAACTTCAAGATCTTCAGCAACTC 360 131 519 Antisense
ACCGCACAAGTCTCTGTGGTGCCTG 276 89 609 Antisense
Sequence Source Affymetrix Proprietary Database