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[183398_at]

Description W05H7.5 /REP_DB=WormBase Gene ID /WP=CE14656 /TR=O02175 /GB=AAB52865.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 32      4grp_total > 08      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 94
1 2 3 4 range
A 11.8
(-3)
A 		47.3
(-0.6)
A 		49
(-0.5)
A 		99.6
(3)
A 		88
B 46.4
(-1.6)
A 		33.2
(-3)
A 		90.3
(3)
A 		66.7
(0.5)
A 		57
C 44.2
(-1.1)
A 		21.5
(-2.7)
A 		16.8
(-3)
A 		105.5
(3)
A 		89
avr 34.1
(-3) 		34
(-3) 		52
(-1.1) 		90.6
(3) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 94
1 2 3 4 5 6 range
A 72.8
(0.8)
A 		54.2
(-0.4)
A 		101.2
(2.6)
A 		77.9
(1.1)
A 		107.9
(3)
A 		13.7
(-3)
A 		94
B 73.8
(3)
A 		59.7
(1.3)
A 		61.4
(1.5)
A 		43.5
(-0.6)
A 		44.4
(-0.5)
A 		23.1
(-3)
A 		51
C 42.5
(-0.5)
A 		61.4
(1.8)
A 		39.5
(-0.9)
A 		70.7
(3)
A 		22.7
(-3)
A 		41.6
(-0.6)
A 		48
avr 63
(2.4) 		58.4
(1.7) 		67.4
(3) 		64
(2.5) 		58.3
(1.7) 		26.1
(-3) 		41
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 4.3
(-3)
A 		10.3
(0.5)
A 		12.8
(2)
A 		14.6
(3)
A 		10
B 14.8
(0.1)
A 		8.2
(-3)
A 		20.9
(3)
A 		14.2
(-0.2)
A 		13
C 14.6
(1.4)
A 		6.2
(-2.8)
A 		5.8
(-3)
A 		17.8
(3)
A 		12
avr 11.2
(-0.5) 		8.2
(-3) 		13.2
(1.1) 		15.5
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 13.4
(-0.9)
A 		19.3
(0.3)
A 		22
(0.8)
A 		19.7
(0.4)
A 		32.6
(3)
A 		3.3
(-3)
A 		29
B 25.7
(3)
A 		19.9
(1)
A 		14.9
(-0.8)
A 		11.5
(-2)
A 		18.1
(0.3)
A 		8.6
(-3)
A 		17
C 15.8
(1.5)
A 		18.7
(3)
A 		10.1
(-1.5)
A 		14.2
(0.6)
A 		7.3
(-3)
A 		13.9
(0.5)
A 		11
avr 18.3
(2.4) 		19.3
(3) 		15.7
(1) 		15.1
(0.6) 		19.3
(3) 		8.6
(-3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183398_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18185
Sequence Type Exemplar sequence
Representative Public ID W05H7.5 NCBI
Target Description W05H7.5 /REP_DB=WormBase Gene ID /WP=CE14656 /TR=O02175 /GB=AAB52865.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171629(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171629 NCBI Caenorhabditis elegans W05H7.4c (W05H7.4) mRNA, complete cds. 9/11 None
W05H7.4c ENSEMBL cdna:known chromosome:CEL140:X:1444297:1446571:-1 gene:W05H7.4 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000043342 2/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
180479 5 1 NM_001029770 174103_at (11)
NM_001029771 183085_at (11)
NM_171627 183085_at (11)
NM_171628 183085_at (11)
NM_171629 183398_at (9)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1444263-1446571(-) 100.0 100.0
Public Domain and Genome References
Ensembl W05H7.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_741721 W05H7.4c [Caenorhabditis elegans] gb|AAX55683.1| Hypothetical protein W05H7.4c [Caenorhabditis elegans] 1.0E-116
blast T29509 hypothetical protein W05H7.5 - Caenorhabditis elegans 4.0E-96
blast NP_001024942 W05H7.4e [Caenorhabditis elegans] gb|AAX55684.1| Hypothetical protein W05H7.4e [Caenorhabditis elegans] 1.0E-28
blast NP_001024941 W05H7.4d [Caenorhabditis elegans] gb|AAO91680.1| Hypothetical protein W05H7.4d [Caenorhabditis elegans] 2.0E-10
blast NP_001024942 W05H7.4e [Caenorhabditis elegans] gb|AAX55684.1| Hypothetical protein W05H7.4e [Caenorhabditis elegans] 2.0E-9
blast NP_741721 W05H7.4c [Caenorhabditis elegans] gb|AAX55683.1| Hypothetical protein W05H7.4c [Caenorhabditis elegans] 2.0E-9
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_741721.2 1 178-200
Sequence
Target Sequence 
>C. ELEGANS:183398_AT
gcgtagatacgactattcacattttaatgaattatagaactctccagaactttagcaaaa
ttttgaaaggtcttggaaaaatgggaaaatgtaattttaaaagcggacaaaaaccgagat
ttattattaaaaaaagactatggatacccgggaactatggtcactcttatggaagcctct
tctcaattgtgaatccccatcacttttcagactccccaataagttgttctccatgttttt
tctatatgctctcagcttcatatggaatattctacaaaaaatcatcagaagtgcacgggc
tgaaattttggaaaaattgccgcccgtggacgtttttgaatgcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGTAGATACGACTATTCACATTTT 614 291 284 Antisense
GAACTCTCCAGAACTTTAGCAAAAT 71 349 320 Antisense
GATACCCGGGAACTATGGTCACTCT 131 425 426 Antisense
TGGTCACTCTTATGGAAGCCTCTTC 170 553 441 Antisense
AATTGTGAATCCCCATCACTTTTCA 316 179 468 Antisense
TCACTTTTCAGACTCCCCAATAAGT 293 623 483 Antisense
GACTCCCCAATAAGTTGTTCTCCAT 448 373 493 Antisense
GTTGTTCTCCATGTTTTTTCTATAT 36 439 506 Antisense
GTTTTTTCTATATGCTCTCAGCTTC 332 449 518 Antisense
GAAGTGCACGGGCTGAAATTTTGGA 91 335 571 Antisense
CCGCCCGTGGACGTTTTTGAATGCG 692 253 603 Antisense
Sequence Source Affymetrix Proprietary Database