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[183396_s_at]

Description F10E7.8 /REP_DB=WormBase Gene ID /WP=CE04363 /TR=Q19300 /GB=AAA82421.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 65      6grp_high1_10_10 > 56      4grp_highest_8_8 > 50      4grp_high_8_8 > 40      6grp_highest_nonorm > 76      6grp_total > 46      4grp_total > 55      6grp_high1_sub > Cu      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 702
1 2 3 4 range
A 1416.5
(3)
P 		1011.6
(-2.3)
P 		954.5
(-3)
P 		1048.1
(-1.8)
P 		462
B 1314.9
(3)
P 		991.6
(-0.2)
P 		981.5
(-0.3)
P 		714.7
(-3)
P 		600
C 1326.1
(3)
P 		915.1
(-2.7)
P 		991.3
(-1.7)
P 		895.7
(-3)
P 		430
avr 1352.5
(3) 		972.8
(-1.9) 		975.8
(-1.8) 		886.2
(-3) 		466

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 734
1 2 3 4 5 6 range
A 1111.9
(-0.6)
P 		1325.7
(1.7)
P 		1022.3
(-1.6)
P 		1287.2
(1.3)
P 		892.8
(-3)
P 		1443.8
(3)
P 		551
B 1223.8
(2.4)
P 		1135.7
(1.5)
P 		710.3
(-3)
P 		1079.1
(0.9)
P 		857.7
(-1.5)
P 		1282.6
(3)
P 		572
C 1059
(-2.2)
P 		1187.3
(-0)
P 		1368.9
(3)
P 		1007.9
(-3)
P 		1069.3
(-2)
P 		1296.5
(1.8)
P 		361
avr 1131.6
(-0.1) 		1216.2
(1.1) 		1033.8
(-1.6) 		1124.7
(-0.2) 		939.9
(-3) 		1341
(3) 		401
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 365
1 2 3 4 range
A 515.7
(3)
P 		219.6
(-1.9)
P 		249.5
(-1.4)
P 		153.4
(-3)
P 		362
B 419.3
(3)
P 		244.9
(-0.9)
P 		227.4
(-1.3)
P 		152.3
(-3)
P 		267
C 439
(3)
P 		263.1
(-0.7)
P 		345.5
(1.1)
P 		151
(-3)
P 		288
avr 458
(3) 		242.5
(-1.2) 		274.1
(-0.6) 		152.2
(-3) 		306

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 306
1 2 3 4 5 6 range
A 205
(-3)
P 		471.5
(3)
P 		222.6
(-2.6)
P 		326.5
(-0.3)
P 		269.4
(-1.6)
P 		351.5
(0.3)
P 		267
B 425.8
(2)
P 		378
(1)
P 		172.5
(-3)
P 		285.8
(-0.8)
P 		348.5
(0.5)
P 		478.3
(3)
P 		306
C 392.5
(1.9)
P 		362.3
(1.1)
P 		348.4
(0.8)
P 		202.7
(-3)
P 		346
(0.7)
P 		434
(3)
P 		231
avr 341.1
(0.2) 		403.9
(2.4) 		247.8
(-3) 		271.7
(-2.2) 		321.3
(-0.5) 		421.3
(3) 		174
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183396_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4060
Sequence Type Exemplar sequence
Representative Public ID F10E7.8 NCBI
Target Description F10E7.8 /REP_DB=WormBase Gene ID /WP=CE04363 /TR=Q19300 /GB=AAA82421.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063066(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063066 NCBI Caenorhabditis elegans F10E7.8 (F10E7.8) mRNA, complete cds. 11/11 None
SNAP00000000725 ENSEMBL cdna:SNAP chromosome:CEL140:II:7100586:7104931:-1 11/11 None
GENEFINDER00000000745 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7101463:7104931:-1 11/11 None
F10E7.8 ENSEMBL cdna:known chromosome:CEL140:II:7101196:7105117:-1 gene:F10E7.8 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7101458-7105113(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F10E7.8
Entrez Gene 174165 Entrez gene
SwissProt Q19300 EMBL-EBI
WormBase CE04363 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1604858_AT similar to family with sequence similarity 40, member B cfa
CANINE_2:CFAAFFX.3167.1.S1_S_AT similar to family with sequence similarity 40, member B cfa
CHICKEN:GGAAFFX.22429.1.S1_AT similar to KIAA1170 protein gga
HU35KSUBA:RC_AA011441_AT family with sequence similarity 40, member B hs
U133_X3P:HS2.268044.1.S1_3P_AT family with sequence similarity 40, member B hs
U133_X3P:HS.268044.0.S1_3P_AT family with sequence similarity 40, member B hs
HG-U133_PLUS_2:1555292_AT family with sequence similarity 40, member B hs
HG-U133_PLUS_2:231880_AT family with sequence similarity 40, member B hs
HG-U133B:231880_AT family with sequence similarity 40, member B hs
HG-U95B:43524_AT family with sequence similarity 40, member B hs
Protein Similarities
Method ID Description E-Value
blast AAA82421 Hypothetical protein F10E7.8 [Caenorhabditis elegans] ref|NP_495467.1| F10E7.8 [Caenorhabditis elegans] 0.0
blast CAE67540 Hypothetical protein CBG13065 [Caenorhabditis briggsae] 0.0
blast BAC31154.1 unnamed protein product [Mus musculus] sp|Q8C9H6|FA40B_MOUSE Protein FAM40B 1.0E-122
blast BAC31154.1 unnamed protein product [Mus musculus] sp|Q8C9H6|FA40B_MOUSE Protein FAM40B 1.0E-117
Protein Domains
Database ID Description E-Value
Pfam IPR005129 EMBL-EBI ArgK protein 9.1E-23
Sequence
Target Sequence 
>C. ELEGANS:183396_S_AT
aatgttttcttcgcaatcaatctcattcgtctactcaacaaattggtcaaagctaaaaac
gatcgagttaaaatgctgatggtgttcaaatctgctccagttttgaagagacttttcaaa
gtacgagtatcggtactacaactttacgtgctgaaagcgatcaaaatgcaatcacgatac
cttggacgccagtggagaaaaagtaatatggacataatttcggcgatctactcgagagtt
cgacatcgaatgaccgatgattgggcgtttgcttctgatatcaagagaaagtgtgattat
caaaaagaagacagtttgatcaaagcaagcatcgaaagattccatagtagacgatattcg
gcattatatcctcaatttgctattgaagtgaatgatgctccaatgcctggtgacgactac
ctgaatcgagttgatatgagagattttgagcccgttgacacgtgtgctcactctgttctt
ggtgcaaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGTTTTCTTCGCAATCAATCTCA 672 163 2191 Antisense
TCAATCTCATTCGTCTACTCAACAA 575 633 2207 Antisense
GATGGTGTTCAAATCTGCTCCAGTT 70 409 2268 Antisense
TGCAATCACGATACCTTGGACGCCA 212 577 2357 Antisense
ATTTCGGCGATCTACTCGAGAGTTC 627 15 2407 Antisense
TGACCGATGATTGGGCGTTTGCTTC 143 571 2441 Antisense
ATGCTCCAATGCCTGGTGACGACTA 113 43 2585 Antisense
GTGACGACTACCTGAATCGAGTTGA 587 479 2600 Antisense
TATGAGAGATTTTGAGCCCGTTGAC 293 655 2625 Antisense
TGAGCCCGTTGACACGTGTGCTCAC 155 569 2637 Antisense
TGCTCACTCTGTTCTTGGTGCAAAT 208 581 2655 Antisense
Sequence Source Affymetrix Proprietary Database