[Home] | [Total List]

[183395_at]

Description K09E2.4 /REP_DB=WormBase Gene ID /WP=CE02817 /TR=Q21391 /GB=AAC46575.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 20      6grp_high1_10_10 > 11      4grp_highest_8_8 > 51      4grp_high_8_8 > 32      6grp_highest_nonorm > 51      6grp_total > 13      4grp_total > 47      6grp_highest_sub > De      6grp_cgc > 50      6grp_high1_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 564
1 2 3 4 range
A 708
(3)
P 		301.4
(-1.9)
P 		236.8
(-2.7)
P 		209.2
(-3)
P 		499
B 758.1
(3)
P 		281.6
(-2.1)
P 		256.1
(-2.3)
P 		194.2
(-3)
P 		564
C 680.9
(3)
P 		267.7
(-2.3)
P 		217.1
(-3)
P 		372.7
(-1)
P 		464
avr 715.7
(3) 		283.6
(-2.4) 		236.7
(-3) 		258.7
(-2.7) 		479

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 445
1 2 3 4 5 6 range
A 720.1
(3)
P 		565.2
(0.5)
P 		489.4
(-0.7)
P 		561.6
(0.4)
P 		597.4
(1)
P 		350.4
(-3)
P 		370
B 675
(3)
P 		577.7
(1.3)
P 		594.3
(1.6)
P 		576.1
(1.3)
P 		453.2
(-0.9)
P 		333.2
(-3)
P 		342
C 670.6
(2.7)
P 		689.4
(3)
P 		596
(1.6)
P 		629.7
(2.1)
P 		464.7
(-0.3)
P 		274.8
(-3)
P 		415
avr 688.6
(3) 		610.8
(1.7) 		559.9
(0.9) 		589.1
(1.4) 		505.1
(0) 		319.5
(-3) 		369
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 227
1 2 3 4 range
A 257.8
(3)
P 		65.4
(-2.1)
P 		61.9
(-2.2)
P 		30.6
(-3)
P 		227
B 241.8
(3)
P 		69.6
(-2.2)
P 		59.4
(-2.5)
P 		41.4
(-3)
P 		200
C 225.4
(3)
P 		77
(-2.5)
P 		75.7
(-2.5)
P 		62.8
(-3)
P 		163
avr 241.7
(3) 		70.7
(-2.2) 		65.7
(-2.4) 		44.9
(-3) 		197

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 163
1 2 3 4 5 6 range
A 132.7
(-0.5)
P 		201
(3)
P 		106.6
(-1.9)
P 		142.4
(-0)
P 		180.3
(1.9)
P 		85.3
(-3)
P 		116
B 234.9
(3)
P 		192.3
(0.7)
P 		144.3
(-1.9)
P 		152.6
(-1.5)
P 		184.1
(0.2)
P 		124.3
(-3)
P 		111
C 248.6
(3)
P 		210.3
(1.5)
P 		151.7
(-0.7)
P 		126.6
(-1.7)
P 		150.4
(-0.8)
P 		92
(-3)
P 		157
avr 205.4
(3) 		201.2
(2.8) 		134.2
(-1.1) 		140.5
(-0.7) 		171.6
(1.1) 		100.5
(-3) 		105
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183395_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16620
Sequence Type Exemplar sequence
Representative Public ID K09E2.4 NCBI
Target Description K09E2.4 /REP_DB=WormBase Gene ID /WP=CE02817 /TR=Q21391 /GB=AAC46575.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029607(11), NM_001029608(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029607 NCBI Caenorhabditis elegans neuRonal IGCAM family member (rig-1) (rig-1) mRNA, complete cds. 11/11 None
NM_001029608 NCBI Caenorhabditis elegans neuRonal IGCAM family member (rig-1) (rig-1) mRNA, complete cds. 11/11 None
GENEFINDER00000011513 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:8661232:8671293:1 11/11 None
SNAP00000011508 ENSEMBL cdna:SNAP chromosome:CEL140:X:8669237:8671293:1 11/11 None
K09E2.4a ENSEMBL cdna:known chromosome:CEL140:X:8661232:8671724:1 gene:K09E2.4 11/11 None
K09E2.4b ENSEMBL cdna:known chromosome:CEL140:X:8669229:8671293:1 gene:K09E2.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8661230-8671292(+) 100.0 100.0
Public Domain and Genome References
Ensembl K09E2.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC46575 Neuronal igcam protein 1, isoform a [Caenorhabditis elegans] ref|NP_001024778.1| neuRonal IGCAM family member (rig-1) [Caenorhabditis elegans] 0.0
blast CAE69345 Hypothetical protein CBG15423 [Caenorhabditis briggsae] 0.0
blast AAP40525 Neuronal igcam protein 1, isoform b [Caenorhabditis elegans] ref|NP_001024779.1| neuRonal IGCAM family member (rig-1) [Caenorhabditis elegans] 1.0E-162
blast AAC46575 Neuronal igcam protein 1, isoform a [Caenorhabditis elegans] ref|NP_001024778.1| neuRonal IGCAM family member (rig-1) [Caenorhabditis elegans] 1.0E-162
Protein Domains
Database ID Description E-Value
Pfam IPR003961 EMBL-EBI Fibronectin, type III 1.2E-9
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.5
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.1
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.22
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 4.5E-7
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001024778.1 1 898-920
NP_001024779.1 1 20-42
K09E2.4a 1 898-920
K09E2.4b 1 20-42
GENEFINDER00000011513 1 868-890
SNAP00000011508 1 20-42
Sequence
Target Sequence 
>C. ELEGANS:183395_AT
gatccaacatatgtctctgcatccaagctgactggagattacggagttcactccacagct
aggtgctattcaccggaaagtcggacctcacatgaaatgttggtttcctattcacaaagt
gcaccacattcaaatgccaacagttcatctccacagatgaacggctcgatgcaacgcgta
aaagcttacaactatcctgattcacttctctactcgccagcaggaacgacttcttcaatt
gcagaaactaatagcagcgggaacggagcaacaagagctcagtgtgactctccaaataac
gcaccagcaagtgacgaaagtgatcaaggaatcagatgtggtggctcgtcaagaaatagc
catatctcttcgacaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCCAACATATGTCTCTGCATCCA 608 415 3070 Antisense
AGTTCACTCCACAGCTAGGTGCTAT 309 63 3114 Antisense
TTCACCGGAAAGTCGGACCTCACAT 214 685 3138 Antisense
GGTTTCCTATTCACAAAGTGCACCA 584 505 3171 Antisense
AGTGCACCACATTCAAATGCCAACA 458 57 3187 Antisense
CAGATGAACGGCTCGATGCAACGCG 592 205 3223 Antisense
ACAACTATCCTGATTCACTTCTCTA 278 113 3257 Antisense
TCGCCAGCAGGAACGACTTCTTCAA 291 599 3283 Antisense
GTGACTCTCCAAATAACGCACCAGC 338 483 3353 Antisense
GAATCAGATGTGGTGGCTCGTCAAG 543 327 3398 Antisense
GAAATAGCCATATCTCTTCGACAGA 376 363 3422 Antisense
Sequence Source Affymetrix Proprietary Database