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[183394_at]

Description T26A8.3 /REP_DB=WormBase Gene ID /WP=CE07549 /TR=Q22803 /GB=AAA85754.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 09      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 124
1 2 3 4 range
A 8.4
(-3)
A 		48.2
(-1)
A 		11
(-2.9)
A 		126.2
(3)
A 		118
B 26.2
(-3)
A 		44.8
(-1.8)
A 		60
(-0.8)
P 		118.6
(3)
A 		92
C 34.1
(-1.2)
A 		2.4
(-3)
A 		21.4
(-1.9)
A 		106.7
(3)
P 		104
avr 22.9
(-3) 		31.8
(-2.4) 		30.8
(-2.5) 		117.2
(3) 		94

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 10.7
(-3)
A 		31
(-1)
A 		30.4
(-1.1)
A 		38.4
(-0.3)
A 		72.3
(3)
A 		14.9
(-2.6)
A 		62
B 39.9
(-0.4)
A 		49.6
(1.4)
A 		46.6
(0.8)
A 		26
(-3)
A 		51.2
(1.7)
P 		58.3
(3)
P 		32
C 23.9
(-1.7)
A 		38.9
(-0)
A 		65.9
(3)
A 		12.1
(-3)
A 		55.1
(1.8)
A 		58.2
(2.1)
A 		54
avr 24.8
(-3) 		39.8
(-0.4) 		47.6
(0.9) 		25.5
(-2.9) 		59.5
(3) 		43.8
(0.3) 		35
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 3.1
(-2.9)
A 		10.5
(-0.1)
A 		2.9
(-3)
A 		18.5
(3)
A 		16
B 8.4
(-3)
A 		11.1
(-2)
A 		13.9
(-1)
P 		25.3
(3)
A 		17
C 11.3
(0.7)
A 		0.7
(-3)
A 		7.4
(-0.7)
A 		18
(3)
P 		17
avr 7.6
(-2.9) 		7.4
(-3) 		8.1
(-2.7) 		20.6
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 2
(-3)
A 		11
(-0.3)
A 		6.6
(-1.6)
A 		9.8
(-0.6)
A 		21.8
(3)
A 		3.6
(-2.5)
A 		20
B 13.9
(-0.2)
A 		16.5
(0.9)
A 		11.3
(-1.2)
A 		6.9
(-3)
A 		20.8
(2.6)
P 		21.7
(3)
P 		15
C 8.8
(-0.8)
A 		11.9
(0.3)
A 		16.8
(2.1)
A 		2.4
(-3)
A 		17.8
(2.4)
A 		19.5
(3)
A 		17
avr 8.2
(-2.2) 		13.1
(-0.1) 		11.6
(-0.7) 		6.4
(-3) 		20.1
(3) 		14.9
(0.7) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183394_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9363
Sequence Type Exemplar sequence
Representative Public ID T26A8.3 NCBI
Target Description T26A8.3 /REP_DB=WormBase Gene ID /WP=CE07549 /TR=Q22803 /GB=AAA85754.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069032(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069032 NCBI Caenorhabditis elegans T26A8.3 (T26A8.3) mRNA, complete cds. 11/11 None
GENEFINDER00000003327 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8425114:8426163:-1 11/11 None
T26A8.3 ENSEMBL cdna:known chromosome:CEL140:IV:8424962:8426163:-1 gene:T26A8.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000003320 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8424967-8426169(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T26A8.3
Entrez Gene 188914 Entrez gene
SwissProt Q22803 EMBL-EBI
WormBase CE07549 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_501433 T26A8.3 [Caenorhabditis elegans] gb|AAA85754.1| Hypothetical protein T26A8.3 [Caenorhabditis elegans] 8.0E-94
blast NP_501433 T26A8.3 [Caenorhabditis elegans] gb|AAA85754.1| Hypothetical protein T26A8.3 [Caenorhabditis elegans] 1.0E-79
blast NP_501417 D2096.5 [Caenorhabditis elegans] gb|AAA81489.2| Hypothetical protein D2096.5 [Caenorhabditis elegans] 2.0E-23
blast NP_501417 D2096.5 [Caenorhabditis elegans] gb|AAA81489.2| Hypothetical protein D2096.5 [Caenorhabditis elegans] 4.0E-23
blast AAC05104 Hypothetical protein F17E9.4 [Caenorhabditis elegans] ref|NP_501413.1| F17E9.4 [Caenorhabditis elegans] 3.0E-17
blast AAC05104 Hypothetical protein F17E9.4 [Caenorhabditis elegans] ref|NP_501413.1| F17E9.4 [Caenorhabditis elegans] 6.0E-17
Sequence
Target Sequence 
>C. ELEGANS:183394_AT
aaatgtgtttgtctttgtgcttcttctgttttgatgtatttcgaactgatacaacctttc
attttaatggaaaactgacatgtggcactcaaggagctccgtttaaagtcaattttttga
gtgtttatgagagagatcttataaaagacgattatctcggaacaatccaaaactttgaga
aagacggaagcggattcaagtacgccatcgatgttaaggacaatggagacggaccattca
atgaagtctatgaaatcttctttgtaattcaacacgactgtactccagaccgtcaattaa
ttaatcaacgagtgtcaatgaccggattccaagttatgaatggacaattctatcacacgc
tggatatcgatttgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATGTGTTTGTCTTTGTGCTTCTT 220 121 35 Antisense
TGTGCTTCTTCTGTTTTGATGTATT 380 557 50 Antisense
TCGAACTGATACAACCTTTCATTTT 31 601 75 Antisense
GACATGTGGCACTCAAGGAGCTCCG 294 369 111 Antisense
CAAGGAGCTCCGTTTAAAGTCAATT 568 183 124 Antisense
GAAGCGGATTCAAGTACGCCATCGA 683 343 221 Antisense
GTAATTCAACACGACTGTACTCCAG 456 463 298 Antisense
GACTGTACTCCAGACCGTCAATTAA 639 373 310 Antisense
AGTGTCAATGACCGGATTCCAAGTT 56 59 345 Antisense
AATGGACAATTCTATCACACGCTGG 57 163 373 Antisense
ATCACACGCTGGATATCGATTTGCA 257 27 386 Antisense
Sequence Source Affymetrix Proprietary Database