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[183393_at]

Description Y39B6B.I /REP_DB=WormBase Gene ID /WP=CE21684 /TR=Q9NEV1 /GB=CAB60914.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 57      4grp_total > 29      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 28.2
(0.4)
A 		38.7
(3)
A 		14.4
(-3)
A 		29.1
(0.6)
A 		24
B 25.1
(3)
A 		8.3
(-2.5)
A 		6.8
(-3)
A 		24.4
(2.8)
A 		18
C 37.2
(3)
A 		36.8
(2.9)
A 		2.6
(-3)
A 		31.5
(2)
A 		35
avr 30.2
(3) 		27.9
(2.4) 		7.9
(-3) 		28.3
(2.5) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 38.4
(3)
A 		4.1
(-3)
A 		6.9
(-2.5)
A 		8.6
(-2.2)
A 		17.7
(-0.6)
A 		22.3
(0.2)
A 		34
B 6.8
(-2.3)
A 		22.7
(1.4)
A 		21.8
(1.2)
A 		3.6
(-3)
A 		5
(-2.7)
A 		29.4
(3)
A 		26
C 16.4
(-1.4)
A 		5.2
(-3)
A 		21.8
(-0.6)
A 		47.2
(3)
A 		6.2
(-2.9)
A 		20.9
(-0.8)
A 		42
avr 20.5
(1.5) 		10.7
(-2.5) 		16.8
(-0) 		19.8
(1.2) 		9.6
(-3) 		24.2
(3) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 10.3
(3)
A 		8.4
(1.2)
A 		3.8
(-3)
A 		4.3
(-2.5)
A 		7
B 8
(3)
A 		2.1
(-2.5)
A 		1.6
(-3)
A 		5.2
(0.4)
A 		6
C 12.3
(3)
A 		10.6
(2.1)
A 		0.9
(-3)
A 		5.3
(-0.7)
A 		11
avr 10.2
(3) 		7
(0.6) 		2.1
(-3) 		4.9
(-0.9) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 7.1
(3)
A 		1.4
(-3)
A 		1.5
(-2.9)
A 		2.2
(-2.2)
A 		5.3
(1.1)
A 		5.4
(1.2)
A 		6
B 2.4
(-2.2)
A 		7.6
(1)
A 		5.3
(-0.4)
A 		1
(-3)
A 		2
(-2.4)
A 		11
(3)
A 		10
C 6.1
(0.4)
A 		1.6
(-3)
A 		5.6
(0)
A 		9.5
(3)
A 		2
(-2.7)
A 		7
(1.1)
A 		8
avr 5.2
(-0.3) 		3.5
(-2.5) 		4.1
(-1.7) 		4.2
(-1.6) 		3.1
(-3) 		7.8
(3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183393_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19450
Sequence Type Exemplar sequence
Representative Public ID Y39B6B.I NCBI
Target Description Y39B6B.I /REP_DB=WormBase Gene ID /WP=CE21684 /TR=Q9NEV1 /GB=CAB60914.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171585(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171585 NCBI Caenorhabditis elegans Y39B6A.22 (Y39B6A.22) mRNA, complete cds. 9/11 None
SNAP00000030541 ENSEMBL cdna:SNAP chromosome:CEL140:V:19045788:19049562:-1 9/11 None
GENEFINDER00000030711 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19045250:19047426:-1 11/11 None
Y39B6A.22 ENSEMBL cdna:known chromosome:CEL140:V:19045788:19047426:-1 gene:Y39B6A.22 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19045249-19047426(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y39B6A.22
Entrez Gene 189740 Entrez gene
SwissProt Q8MYN7 EMBL-EBI
WormBase CE29863 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4194 pepsin A activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAD31819 Hypothetical protein Y39B6A.22 [Caenorhabditis elegans] ref|NP_741675.1| Y39B6A.22 [Caenorhabditis elegans] 0.0
blast T45035 hypothetical protein Y39B6B.i [imported] - Caenorhabditis elegans 0.0
blast CAD31820 Hypothetical protein Y39B6A.23 [Caenorhabditis elegans] ref|NP_741674.1| Y39B6A.23 [Caenorhabditis elegans] 1.0E-153
Protein Domains
Database ID Description E-Value
Pfam IPR001461 EMBL-EBI Peptidase A1, pepsin 1.2E-68
Pfam IPR001461 EMBL-EBI Peptidase A1, pepsin 1.2E-68
Pfam IPR001461 EMBL-EBI Peptidase A1, pepsin 1.2E-57
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000030541 1 7-26
Sequence
Target Sequence 
>C. ELEGANS:183393_AT
ctttctggcaattcccgttggatggagtggcgattgggagttatacgtcgatgaagaagg
atcaggcaatctccgactccggagactttgggctccgactccctctggccgtcctcaatg
cagttatccaacaaaccaaggccacctatgactggaccaatgagttctacacactcgact
gctccactatgcaaacccaacctgaccttgtattcactatcggtggaatgcagtaccctg
tgaagtctgtcgagtatattcttgacttgggacttggcaatgggagatgtgttcttgcaa
tgttcacagactccagtacaggattcgggccgtcgtttgggtttggaaatacaaaattca
atgaacctttcatacagactaaaacactgcgagcaaacaaaacacaaatgaatcagtctc
atagggacgtgagaatcttctccacaatttgcactcgaatatcactgataacaattcata
ctccttggtctcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTTCTGGCAATTCCCGTTGGATGG 106 3 755 Antisense
GAGTGGCGATTGGGAGTTATACGTC 659 401 779 Antisense
ATCAGGCAATCTCCGACTCCGGAGA 480 27 815 Antisense
GACTCCGGAGACTTTGGGCTCCGAC 442 369 829 Antisense
GACTGGACCAATGAGTTCTACACAC 628 375 904 Antisense
CCAACCTGACCTTGTATTCACTATC 75 277 951 Antisense
GTGTTCTTGCAATGTTCACAGACTC 671 485 1043 Antisense
GTTCACAGACTCCAGTACAGGATTC 178 445 1056 Antisense
TACAGGATTCGGGCCGTCGTTTGGG 444 639 1071 Antisense
ATTTGCACTCGAATATCACTGATAA 658 17 1201 Antisense
AACAATTCATACTCCTTGGTCTCAA 673 133 1224 Antisense
Sequence Source Affymetrix Proprietary Database