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[183392_at]

Description K07E3.1 /REP_DB=WormBase Gene ID /WP=CE04718 /TR=Q21288 /GB=AAC69098.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 31      4grp_total > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 109
1 2 3 4 range
A 201.1
(0.1)
P 		147.1
(-3)
A 		171.5
(-1.6)
A 		250.6
(3)
A 		104
B 191.9
(-1.6)
A 		173
(-3)
A 		175
(-2.9)
A 		253.2
(3)
A 		80
C 186.9
(-1.9)
M 		187.2
(-1.9)
A 		171.9
(-3)
A 		255.9
(3)
A 		84
avr 193.3
(-1.3) 		169.1
(-3) 		172.8
(-2.7) 		253.2
(3) 		84

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 179
1 2 3 4 5 6 range
A 138.2
(-0.9)
A 		197.4
(2)
A 		217.4
(3)
A 		96.2
(-3)
A 		96.8
(-3)
A 		144
(-0.6)
A 		121
B 196.8
(1.9)
A 		216.1
(3)
A 		202.8
(2.3)
A 		148.3
(-0.7)
A 		107.1
(-3)
A 		119.4
(-2.3)
A 		109
C 140.5
(-1.4)
A 		196.6
(0.5)
A 		270.6
(3)
A 		215.8
(1.2)
A 		91.9
(-3)
A 		137.4
(-1.5)
A 		179
avr 158.5
(-0.3) 		203.4
(1.8) 		230.3
(3) 		153.4
(-0.5) 		98.6
(-3) 		133.6
(-1.4) 		132
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 73.2
(3)
P 		31.9
(-3)
A 		44.8
(-1.1)
A 		36.7
(-2.3)
A 		41
B 61.2
(3)
A 		42.7
(-2.4)
A 		40.5
(-3)
A 		53.9
(0.9)
A 		21
C 61.9
(3)
M 		53.8
(0.4)
A 		59.9
(2.4)
A 		43.1
(-3)
A 		19
avr 65.4
(3) 		42.8
(-3) 		48.4
(-1.5) 		44.6
(-2.5) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 25.5
(-2.9)
A 		70.2
(3)
A 		47.4
(0)
A 		24.4
(-3)
A 		29.2
(-2.4)
A 		35.1
(-1.6)
A 		46
B 68.5
(2.4)
A 		71.9
(3)
A 		49.2
(-1.2)
A 		39.3
(-3)
A 		43.5
(-2.2)
A 		44.5
(-2)
A 		33
C 52.1
(0.4)
A 		60
(1.6)
A 		68.9
(3)
A 		43.4
(-0.9)
A 		29.7
(-3)
A 		46
(-0.5)
A 		39
avr 48.7
(-0.4) 		67.4
(3) 		55.2
(0.8) 		35.7
(-2.7) 		34.1
(-3) 		41.9
(-1.6) 		33
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183392_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16949
Sequence Type Exemplar sequence
Representative Public ID K07E3.1 NCBI
Target Description K07E3.1 /REP_DB=WormBase Gene ID /WP=CE04718 /TR=Q21288 /GB=AAC69098.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076965(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076965 NCBI Caenorhabditis elegans K07E3.1 (K07E3.1) mRNA, complete cds. 11/11 None
SNAP00000001635 ENSEMBL cdna:SNAP chromosome:CEL140:X:8112765:8113867:1 11/11 None
GENEFINDER00000001651 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:8113148:8113867:1 11/11 None
K07E3.1 ENSEMBL cdna:known chromosome:CEL140:X:8108333:8114686:1 gene:K07E3.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8108331-8113866(+) 99.81 100.0
Public Domain and Genome References
Gene Title
Ensembl K07E3.1
Entrez Gene 181068 Entrez gene
SwissProt Q21288 EMBL-EBI
WormBase CE04718 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC69098 Hypothetical protein K07E3.1 [Caenorhabditis elegans] ref|NP_509366.1| K07E3.1 [Caenorhabditis elegans] 0.0
blast AAC69098 Hypothetical protein K07E3.1 [Caenorhabditis elegans] ref|NP_509366.1| K07E3.1 [Caenorhabditis elegans] 1.0E-176
blast AAC69098 Hypothetical protein K07E3.1 [Caenorhabditis elegans] ref|NP_509366.1| K07E3.1 [Caenorhabditis elegans] 1.0E-100
blast CAE70352 Hypothetical protein CBG16903 [Caenorhabditis briggsae] 5.0E-53
blast CAE70352 Hypothetical protein CBG16903 [Caenorhabditis briggsae] 3.0E-51
blast CAE70352 Hypothetical protein CBG16903 [Caenorhabditis briggsae] 3.0E-42
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509366.1 4 41-63,68-90,100-122,135-157
K07E3.1 4 41-63,68-90,100-122,135-157
Sequence
Target Sequence 
>C. ELEGANS:183392_AT
atgattgatagcactctctctgacaaaaaacccattgctgtaccggttcaattggttcgc
cacaacaattctggaacagttccagtagatattaccgaaattgatgaaaacgccaatatg
gtggaaaaactgctgatgtttgactctttgaagaaactggacgaacttgacctttctgaa
gttgaacgcggatcaattgttaaagggctcgaagatatgaagaaaatgtacctccgtgta
gaaaaagccggacaacttatctcctacaagacaggaagctctatggtcactgagtgcgtc
gaagcaaagctcttgtacttgacgataaaacttttaagcaatcgcgtggagctcagcgag
caagatgaaatgatggttttggaaattggcagcaaagttgcacattgctcgacaagcttt
aattacactaactatctcactgctctcctcaactttgctcctgctcgagctgaaactctc
ccagctggaactgatcttcgcacaaattatgagcagagcgtagtgctcaccaaagtattc
ctaagacggacttcgatcctctttga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGATTGATAGCACTCTCTCTGACA 281 47 3139 Antisense
TGTACCGGTTCAATTGGTTCGCCAC 189 557 3177 Antisense
AACTGGACGAACTTGACCTTTCTGA 673 139 3293 Antisense
AAGCCGGACAACTTATCTCCTACAA 32 149 3383 Antisense
GAAGCTCTATGGTCACTGAGTGCGT 332 343 3413 Antisense
GCAATCGCGTGGAGCTCAGCGAGCA 671 321 3476 Antisense
AGTTGCACATTGCTCGACAAGCTTT 151 65 3534 Antisense
ATTACACTAACTATCTCACTGCTCT 266 13 3560 Antisense
AACTTTGCTCCTGCTCGAGCTGAAA 692 137 3589 Antisense
GAAACTCTCCCAGCTGGAACTGATC 516 357 3610 Antisense
TAAGACGGACTTCGATCCTCTTTGA 127 637 3680 Antisense
Sequence Source Affymetrix Proprietary Database