[Home] | [Total List]

[183391_at]

Description R09H10.1 /REP_DB=WormBase Gene ID /WP=CE12658 /TR=Q21880 /GB=CAB00870.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 33      4grp_total > 28      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 23.4
(3)
A 		11.4
(-0.9)
A 		4.9
(-3)
A 		12.6
(-0.5)
A 		19
B 36.6
(3)
A 		28.1
(1.5)
A 		3.3
(-3)
A 		26
(1.1)
A 		33
C 22.5
(-0.4)
A 		46
(2.8)
A 		3.1
(-3)
A 		47.4
(3)
A 		44
avr 27.5
(2.7) 		28.5
(3) 		3.8
(-3) 		28.7
(3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 47.8
(3)
A 		8.9
(-2.5)
A 		27.2
(0.1)
A 		9.9
(-2.4)
A 		21.5
(-0.7)
A 		5.3
(-3)
A 		43
B 43.5
(3)
A 		23.6
(0.1)
A 		28.5
(0.8)
A 		5
(-2.7)
A 		5.4
(-2.6)
A 		2.7
(-3)
A 		41
C 35
(0.3)
A 		41.9
(1.1)
A 		59.5
(3)
A 		5.3
(-2.9)
A 		5.2
(-2.9)
A 		4.6
(-3)
A 		55
avr 42.1
(3) 		24.8
(0.3) 		38.4
(2.4) 		6.7
(-2.6) 		10.7
(-2) 		4.2
(-3) 		38
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 8.5
(3)
A 		2.5
(-2)
A 		1.3
(-3)
A 		1.8
(-2.6)
A 		7
B 11.7
(3)
A 		7
(0.4)
A 		0.8
(-3)
A 		5.5
(-0.4)
A 		11
C 7.4
(0.1)
A 		13.2
(3)
A 		1.1
(-3)
A 		8
(0.4)
A 		12
avr 9.2
(3) 		7.6
(1.8) 		1.1
(-3) 		5.1
(-0) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 8.8
(3)
A 		3.2
(-1.5)
A 		5.9
(0.7)
A 		2.5
(-2)
A 		6.5
(1.2)
A 		1.3
(-3)
A 		8
B 15.1
(3)
A 		7.9
(-0.1)
A 		6.9
(-0.5)
A 		1.3
(-2.9)
A 		2.2
(-2.5)
A 		1
(-3)
A 		14
C 13
(2.1)
A 		12.8
(2)
A 		15.1
(3)
A 		1.1
(-3)
A 		1.7
(-2.7)
A 		1.5
(-2.8)
A 		14
avr 12.3
(3) 		8
(0.7) 		9.3
(1.4) 		1.6
(-2.8) 		3.5
(-1.8) 		1.3
(-3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183391_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10275
Sequence Type Exemplar sequence
Representative Public ID R09H10.1 NCBI
Target Description R09H10.1 /REP_DB=WormBase Gene ID /WP=CE12658 /TR=Q21880 /GB=CAB00870.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069559(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069559 NCBI Caenorhabditis elegans R09H10.1 (R09H10.1) mRNA, complete cds. 11/11 None
SNAP00000043238 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10600690:10601724:1 11/11 None
GENEFINDER00000043246 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10597932:10601724:1 11/11 None
R09H10.1 ENSEMBL cdna:known chromosome:CEL140:IV:10599706:10601724:1 gene:R09H10.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10599711-10601730(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R09H10.1
Entrez Gene 187755 Entrez gene
SwissProt Q21880 EMBL-EBI
WormBase CE12658 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB00870 Hypothetical protein R09H10.1 [Caenorhabditis elegans] ref|NP_501960.1| R09H10.1 [Caenorhabditis elegans] 0.0
blast CAB00870 Hypothetical protein R09H10.1 [Caenorhabditis elegans] ref|NP_501960.1| R09H10.1 [Caenorhabditis elegans] 1.0E-176
blast CAB00870 Hypothetical protein R09H10.1 [Caenorhabditis elegans] ref|NP_501960.1| R09H10.1 [Caenorhabditis elegans] 1.0E-138
blast CAE60752 Hypothetical protein CBG04438 [Caenorhabditis briggsae] 1.0E-131
blast CAE60752 Hypothetical protein CBG04438 [Caenorhabditis briggsae] 1.0E-128
blast CAE60752 Hypothetical protein CBG04438 [Caenorhabditis briggsae] 1.0E-103
blast CAB00871 Hypothetical protein R09H10.2 [Caenorhabditis elegans] ref|NP_501961.1| R09H10.2 [Caenorhabditis elegans] 3.0E-57
Protein Domains
Database ID Description E-Value
Pfam IPR002485 EMBL-EBI Protein of unknown function DUF13 1.3E-46
Pfam IPR002485 EMBL-EBI Protein of unknown function DUF13 1.3E-46
Pfam IPR002485 EMBL-EBI Protein of unknown function DUF13 1.3E-46
Sequence
Target Sequence 
>C. ELEGANS:183391_AT
atggaaccgttcaccaatttggatgagacaaagtattcaatattaccaatttgtgaaaaa
cctgacatgagtgttgtgacattgggtgtgggacaagatgtcaatgcagagacacagcta
ttacagcgtcttggaaattcttctctgctattttttggagcggatccgatagtggaaggg
aatgacgaatcattttcaaaagtcggcacattcttcccatttgcaattggaaatagttcg
aaaatgggaaaagcttcagttcttgaaaatggagtgtatgttgataaacgagtggttcac
gtagaacttatcgagtttttgaaaggaattatcgggaaaacgttttttgacaatatttgg
attgacggagaatacgctgaatatgaattgtttgattacttttataatggtggaaagctg
gataaggagaaaattacaatttgtcagtttaacatggaagtgcatcttccgactcttcgt
caacaacaagaatttaaagaatttattgtaagaatatacaacgacaaacgttacgctttc
ttccgcccggttcgcggaaatcatattcgtctttattttgtcaatttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGAACCGTTCACCAATTTGGATG 602 47 451 Antisense
GTGTTGTGACATTGGGTGTGGGACA 516 483 521 Antisense
GACACAGCTATTACAGCGTCTTGGA 160 367 561 Antisense
GCTATTTTTTGGAGCGGATCCGATA 226 303 597 Antisense
TCAAAAGTCGGCACATTCTTCCCAT 504 629 646 Antisense
CATGGAAGTGCATCTTCCGACTCTT 419 209 903 Antisense
CTTCCGACTCTTCGTCAACAACAAG 384 219 916 Antisense
TACAACGACAAACGTTACGCTTTCT 272 641 967 Antisense
TCTTCCGCCCGGTTCGCGGAAATCA 259 613 989 Antisense
GGTTCGCGGAAATCATATTCGTCTT 188 507 999 Antisense
TATTCGTCTTTATTTTGTCAATTTC 120 665 1014 Antisense
Sequence Source Affymetrix Proprietary Database