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[183390_at]

Description F55D1.1 /REP_DB=WormBase Gene ID /WP=CE07275 /TR=Q20825 /GB=AAA93413.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 82      4grp_total > 62      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 7.9
(-2.9)
A 		31.2
(3)
A 		7.6
(-3)
A 		10.7
(-2.2)
A 		24
B 21
(3)
A 		2.2
(-3)
A 		20.3
(2.8)
A 		12.8
(0.4)
A 		19
C 14.3
(3)
A 		3.4
(-3)
A 		8.7
(-0.1)
A 		5.2
(-2)
A 		11
avr 14.4
(3) 		12.3
(0.4) 		12.2
(0.2) 		9.6
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 0.8
(-3)
A 		2.2
(-1.7)
A 		4.1
(0.1)
A 		7.2
(3)
A 		1.5
(-2.3)
A 		2.3
(-1.6)
A 		6
B 1.2
(-2.7)
A 		4.5
(-1.3)
A 		14.6
(3)
A 		5
(-1.1)
A 		1.5
(-2.6)
A 		0.6
(-3)
A 		14
C 10.8
(-0.5)
A 		3.5
(-2.3)
A 		4.2
(-2.1)
A 		0.7
(-3)
A 		25
(3)
A 		1.8
(-2.7)
A 		24
avr 4.3
(-0.9) 		3.4
(-1.6) 		7.6
(1.7) 		4.3
(-0.9) 		9.3
(3) 		1.6
(-3) 		8
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 2.9
(-1.5)
A 		6.8
(3)
A 		2
(-2.5)
A 		1.6
(-3)
A 		5
B 6.7
(3)
A 		0.5
(-3)
A 		4.7
(1.1)
A 		2.7
(-0.9)
A 		6
C 4.7
(3)
A 		1
(-2.8)
A 		3
(0.3)
A 		0.9
(-3)
A 		4
avr 4.8
(3) 		2.8
(-0.9) 		3.2
(-0.1) 		1.7
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 0.2
(-3)
A 		0.8
(-0.8)
A 		0.9
(-0.4)
A 		1.8
(3)
A 		0.5
(-1.9)
A 		0.6
(-1.5)
A 		2
B 0.4
(-2.6)
A 		1.5
(-0.6)
A 		3.5
(3)
A 		1.3
(-1)
A 		0.6
(-2.3)
A 		0.2
(-3)
A 		3
C 4
(-0.1)
A 		1.1
(-2.3)
A 		1.1
(-2.3)
A 		0.1
(-3)
A 		8.1
(3)
A 		0.6
(-2.6)
A 		8
avr 1.5
(-0.7) 		1.1
(-1.6) 		1.8
(0) 		1.1
(-1.6) 		3.1
(3) 		0.5
(-3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183390_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16558
Sequence Type Exemplar sequence
Representative Public ID F55D1.1 NCBI
Target Description F55D1.1 /REP_DB=WormBase Gene ID /WP=CE07275 /TR=Q20825 /GB=AAA93413.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076530(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076530 NCBI Caenorhabditis elegans F55D1.1 (F55D1.1) mRNA, complete cds. 11/11 None
GENEFINDER00000032881 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:5488803:5490077:1 9/11 None
F55D1.1 ENSEMBL cdna:known chromosome:CEL140:X:5489802:5490077:1 gene:F55D1.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5489801-5490077(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F55D1.1
Entrez Gene 186304 Entrez gene
SwissProt Q20825 EMBL-EBI
WormBase CE07275 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA93413 Hypothetical protein F55D1.1 [Caenorhabditis elegans] ref|NP_508931.1| F55D1.1 [Caenorhabditis elegans] 1.0E-45
blast AAA93412 Hypothetical protein F55D1.2 [Caenorhabditis elegans] ref|NP_508930.1| F55D1.2 [Caenorhabditis elegans] 1.0E-43
blast AAA93413 Hypothetical protein F55D1.1 [Caenorhabditis elegans] ref|NP_508931.1| F55D1.1 [Caenorhabditis elegans] 1.0E-40
Sequence
Target Sequence 
>C. ELEGANS:183390_AT
gaaaatttcgcagcattgccattgtatgttacttttgttgaaagatttaataagggcctt
aaatcgtgcctgaatgtgccagactgccagattgccaaaaaggtgtcaaaaatggcaact
acggcagttcacgttgaattttcgacaggaaaccgttacattttcaaatcaaatatttta
ttaccttccaattttgatttttcattaaaaaattcgatggcagtttcgatggttcta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAAATTTCGCAGCATTGCCATTGT 416 353 22 Antisense
GCATTGCCATTGTATGTTACTTTTG 685 307 34 Antisense
ATAAGGGCCTTAAATCGTGCCTGAA 587 23 71 Antisense
ATCGTGCCTGAATGTGCCAGACTGC 650 35 84 Antisense
GTGCCAGACTGCCAGATTGCCAAAA 191 479 97 Antisense
AATGGCAACTACGGCAGTTCACGTT 370 161 132 Antisense
GGCAGTTCACGTTGAATTTTCGACA 234 537 144 Antisense
TCGACAGGAAACCGTTACATTTTCA 197 593 163 Antisense
ATCAAATATTTTATTACCTTCCAAT 554 25 189 Antisense
TACCTTCCAATTTTGATTTTTCATT 671 649 203 Antisense
TTCGATGGCAGTTTCGATGGTTCTA 677 695 234 Antisense
Sequence Source Affymetrix Proprietary Database