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[183389_at]

Description Y39B6B.Z /REP_DB=WormBase Gene ID /WP=CE21701 /TR=Q9NET4 /GB=CAB60931.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 45      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 65.3
(3)
A 		44.8
(0.9)
A 		45.9
(1)
A 		7.3
(-3)
A 		58
B 69.4
(3)
P 		60.2
(2)
A 		21.4
(-2.2)
A 		13.7
(-3)
A 		56
C 55.5
(1.8)
A 		67.1
(3)
A 		11.2
(-3)
A 		62
(2.5)
M 		56
avr 63.4
(3) 		57.4
(2) 		26.2
(-3) 		27.7
(-2.8) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 81
1 2 3 4 5 6 range
A 50.1
(0.5)
A 		16.6
(-2)
A 		84
(3)
A 		59.5
(1.2)
A 		57.2
(1)
A 		3.3
(-3)
A 		81
B 46.9
(3)
A 		30
(-1)
A 		21.6
(-3)
A 		35.8
(0.4)
A 		46.4
(2.9)
A 		41.4
(1.7)
A 		25
C 34.3
(-1.1)
A 		31.9
(-1.7)
A 		26.5
(-3)
A 		26.6
(-3)
A 		50.8
(3)
A 		47.9
(2.3)
P 		24
avr 43.8
(1.2) 		26.2
(-3) 		44
(1.2) 		40.6
(0.4) 		51.5
(3) 		30.9
(-1.9) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 23.8
(3)
A 		9.7
(-0.7)
A 		12
(-0.1)
A 		1.1
(-3)
A 		23
B 22.1
(3)
P 		14.9
(0.7)
A 		5
(-2.3)
A 		2.9
(-3)
A 		19
C 18.4
(2.6)
A 		19.3
(3)
A 		3.9
(-3)
A 		10.5
(-0.4)
M 		15
avr 21.4
(3) 		14.6
(0.5) 		7
(-2.2) 		4.8
(-3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 9.2
(-0.1)
A 		5.9
(-1.3)
A 		18.3
(3)
A 		15.1
(1.9)
A 		17.3
(2.7)
A 		0.8
(-3)
A 		18
B 16.3
(1.9)
A 		10
(-0.9)
A 		5.2
(-3)
A 		9.5
(-1.1)
A 		18.8
(3)
A 		15.4
(1.5)
A 		14
C 12.7
(1)
A 		9.7
(-0.7)
A 		6.7
(-2.3)
A 		5.4
(-3)
A 		16.4
(3)
A 		16
(2.8)
P 		11
avr 12.7
(-0.2) 		8.5
(-3) 		10.1
(-1.9) 		10
(-2) 		17.5
(3) 		10.7
(-1.5) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183389_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19448
Sequence Type Exemplar sequence
Representative Public ID Y39B6B.Z NCBI
Target Description Y39B6B.Z /REP_DB=WormBase Gene ID /WP=CE21701 /TR=Q9NET4 /GB=CAB60931.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171601(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171601 NCBI Caenorhabditis elegans Y39B6A.7 (Y39B6A.7) mRNA, complete cds. 11/11 None
GENEFINDER00000030697 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19148351:19151728:-1 11/11 None
Y39B6A.7 ENSEMBL cdna:known chromosome:CEL140:V:19148299:19151720:-1 gene:Y39B6A.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19148298-19151720(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y39B6A.7
Entrez Gene 189736 Entrez gene
SwissProt Q9NET4 EMBL-EBI
WormBase CE21701 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC51070 Hypothetical protein Y39B6A.7 [Caenorhabditis elegans] ref|NP_741691.1| Y39B6A.7 [Caenorhabditis elegans] 0.0
blast CAE73135 Hypothetical protein CBG20522 [Caenorhabditis briggsae] 1.0E-115
blast CAB07304 B0413.3 [Caenorhabditis elegans] 2.0E-90
Sequence
Target Sequence 
>C. ELEGANS:183389_AT
gcagatgattttggctcgcggagccccgccagatgtgctttttctgactgttgggggcaa
tgatatcgggtttacggatgtgatttcaatgattcaacgggataaattgaatgagaaatt
ttttgatatgagattctttttcgtatctcatcaaatcgatcgggttgcaagacgtcttga
ggagcttaatattacacgcgtagttattcttgactactatgacgtcaccagaaatgagaa
gggagtggtggacgggtcttgcggcgcttttggacaggtctccctaccaaatctccagct
cgccgagcgcaaaatcttccaaaaactcaataacctactgcgacggaaagcaaagcaaca
tggctgggttaccgtagacactacggaaatattcaggacacgtggcatttgttcaaagga
ttcgttgatacggtcccgtaacgaaagtatgcgtctccagggcaacgagtacggcagctt
c

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAGATGATTTTGGCTCGCGGAGCC 87 311 648 Antisense
TGTGCTTTTTCTGACTGTTGGGGGC 311 537 681 Antisense
AATCGATCGGGTTGCAAGACGTCTT 247 169 801 Antisense
GAAGGGAGTGGTGGACGGGTCTTGC 492 331 885 Antisense
TTTGGACAGGTCTCCCTACCAAATC 351 665 916 Antisense
TCGCCGAGCGCAAAATCTTCCAAAA 681 599 947 Antisense
AAACTCAATAACCTACTGCGACGGA 660 125 970 Antisense
ATGGCTGGGTTACCGTAGACACTAC 209 49 1007 Antisense
TTCAGGACACGTGGCATTTGTTCAA 682 679 1039 Antisense
GAAAGTATGCGTCTCCAGGGCAACG 326 359 1090 Antisense
CCAGGGCAACGAGTACGGCAGCTTC 14 273 1104 Antisense
Sequence Source Affymetrix Proprietary Database