[Home] | [Total List]

[183386_s_at]

Description ZK250.2 /REP_DB=WormBase Gene ID /WP=CE15269 /TR=O17302 /GB=AAB71071.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 28      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 54.9
(2)
A 		64.6
(3)
A 		8.2
(-3)
A 		63.8
(2.9)
A 		56
B 29.2
(-0.6)
A 		59.6
(3)
A 		9.1
(-3)
A 		53.7
(2.3)
A 		51
C 63.7
(3)
A 		29.3
(-3)
A 		48.6
(0.4)
A 		51.1
(0.8)
A 		34
avr 49.3
(1.8) 		51.2
(2.1) 		22
(-3) 		56.2
(3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 42.4
(1.7)
A 		49.8
(3)
A 		26.2
(-1.2)
A 		41.1
(1.4)
A 		32.2
(-0.2)
A 		16.3
(-3)
A 		34
B 33
(-0.3)
A 		30.2
(-0.7)
A 		40.2
(1)
A 		16.9
(-3)
A 		52.1
(3)
A 		31.3
(-0.5)
A 		35
C 36.7
(0.7)
A 		42.4
(1.4)
A 		3.8
(-3)
A 		37.3
(0.8)
A 		56.7
(3)
A 		50.8
(2.3)
A 		53
avr 37.4
(0.6) 		40.8
(1.4) 		23.4
(-3) 		31.8
(-0.9) 		47
(3) 		32.8
(-0.6) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 20
(3)
A 		14
(1)
A 		2.1
(-3)
A 		9.3
(-0.6)
A 		18
B 9.3
(0.4)
A 		14.7
(3)
A 		2.1
(-3)
A 		11.5
(1.5)
A 		13
C 21.1
(3)
A 		8.4
(-3)
A 		16.9
(1)
A 		8.6
(-2.9)
A 		13
avr 16.8
(3) 		12.4
(0.3) 		7
(-3) 		9.8
(-1.3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 7.8
(-1.3)
A 		17.7
(3)
A 		5.7
(-2.3)
A 		10.4
(-0.2)
A 		9.7
(-0.5)
A 		4
(-3)
A 		14
B 11.5
(-0.5)
A 		10
(-1)
A 		9.8
(-1.1)
A 		4.5
(-3)
A 		21.2
(3)
A 		11.7
(-0.4)
A 		17
C 13.6
(1.4)
A 		12.9
(1.1)
A 		1
(-3)
A 		7.5
(-0.7)
A 		18.3
(3)
A 		17
(2.5)
A 		17
avr 11
(0) 		13.5
(1.4) 		5.5
(-3) 		7.5
(-1.9) 		16.4
(3) 		10.9
(-0) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183386_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4949
Sequence Type Exemplar sequence
Representative Public ID ZK250.2 NCBI
Target Description ZK250.2 /REP_DB=WormBase Gene ID /WP=CE15269 /TR=O17302 /GB=AAB71071.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061694(11), NM_061736(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061694 NCBI Caenorhabditis elegans C52E2.3 (C52E2.3) mRNA, complete cds. 11/11 None
NM_061736 NCBI Caenorhabditis elegans ZK250.2 (ZK250.2) mRNA, complete cds. 11/11 None
GENEFINDER00000013036 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1947909:1951078:1 11/11 None
C52E2.3 ENSEMBL cdna:known chromosome:CEL140:II:1851246:1852485:1 gene:C52E2.3 11/11 None
ZK250.2 ENSEMBL cdna:known chromosome:CEL140:II:1948694:1949895:1 gene:ZK250.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000007512 7/11 Cross Hyb Matching Probes None
GENEFINDER00000007521 8/11 Cross Hyb Matching Probes None
SNAP00000013029 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1948692-1949894(+) 100.0 100.0
chrII:1851244-1852484(+) 97.3 97.3
Public Domain and Genome References
Gene Title

Ensembl C52E2.3
ZK250.2
Entrez Gene 183725 Entrez gene
191258 Entrez gene
SwissProt Q9N4K7 EMBL-EBI
O17302 EMBL-EBI
WormBase CE25827 Wormbase
CE15269 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF35427 Hypothetical protein C52E2.3 [Caenorhabditis elegans] ref|NP_494095.1| C52E2.3 [Caenorhabditis elegans] 1.0E-102
blast AAB71071 Hypothetical protein ZK250.2 [Caenorhabditis elegans] ref|NP_494137.1| ZK250.2 [Caenorhabditis elegans] 1.0E-95
blast AAB71071 Hypothetical protein ZK250.2 [Caenorhabditis elegans] ref|NP_494137.1| ZK250.2 [Caenorhabditis elegans] 2.0E-94
blast AAB71071 Hypothetical protein ZK250.2 [Caenorhabditis elegans] ref|NP_494137.1| ZK250.2 [Caenorhabditis elegans] 3.0E-92
blast AAF35427 Hypothetical protein C52E2.3 [Caenorhabditis elegans] ref|NP_494095.1| C52E2.3 [Caenorhabditis elegans] 2.0E-89
blast AAF35427 Hypothetical protein C52E2.3 [Caenorhabditis elegans] ref|NP_494095.1| C52E2.3 [Caenorhabditis elegans] 2.0E-87
Protein Domains
Database ID Description E-Value
Pfam IPR003326 EMBL-EBI Protein of unknown function DUF130 3.6E-70
Pfam IPR003326 EMBL-EBI Protein of unknown function DUF130 4.3E-74
Pfam IPR003326 EMBL-EBI Protein of unknown function DUF130 1.5E-70
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000013036 1 46-68
Sequence
Target Sequence 
>C. ELEGANS:183386_S_AT
gaacttctattttatatccgtgtgttctattatttcatccttggcggttttaacagaaag
ttgtatgcgaatggttccacgaaaggacgtatatatttcgagcacattagctccggaggt
ggacccgcctaccacattggctccagagactgctgctcctactacacatgctgagactgg
catgactgaggaaatgatgacaacgcctgtagtggaagtttcaactgtaacagaaaaagt
atgcccagggatttcagcagaatgtccagatctgaaactgcaattctacacaccagtaga
cactatagaacaagatggctgctccgtcctaaaatgcccagcaggcgggaaaccatatgc
gaccacacatttctcgaaaagtgaaattccgaaaccgccaactaccaacgacgaagatga
atttactatttataaagccgtcgaagctgaaaatttggataagatcttcgttgatatatt
cgggatcacatgtgaaggcggggtgtggaaggcgtcagtgtatccgaatggga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACTTCTATTTTATATCCGTGTGT 603 349 15 Antisense
CCGTGTGTTCTATTATTTCATCCTT 612 265 32 Antisense
TTTCATCCTTGGCGGTTTTAACAGA 241 673 47 Antisense
TTTCGAGCACATTAGCTCCGGAGGT 422 669 110 Antisense
CTGCTCCTACTACACATGCTGAGAC 495 237 167 Antisense
TCTGAAACTGCAATTCTACACACCA 414 609 285 Antisense
AAATGCCCAGCAGGCGGGAAACCAT 324 117 346 Antisense
AACCATATGCGACCACACATTTCTC 422 147 365 Antisense
ACCGCCAACTACCAACGACGAAGAT 163 89 408 Antisense
GAAGGCGGGGTGTGGAAGGCGTCAG 223 249 508 Antisense
AAGGCGTCAGTGTATCCGAATGGGA 359 161 523 Antisense
Sequence Source Affymetrix Proprietary Database