[Home] | [Total List]

[183385_at]

Description C32H11.2 /REP_DB=WormBase Gene ID /WP=CE19709 /TR=Q9XUH1 /GB=CAB05140.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 07      4grp_total > 02      6grp_cgc > 21      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 3.7
(-2.9)
A 		2.5
(-3)
A 		6
(-2.7)
A 		79.4
(3)
M 		77
B 4.5
(-2.2)
A 		18.9
(3)
A 		16.8
(2.2)
A 		2.4
(-3)
A 		17
C 17.1
(-1.8)
A 		5.1
(-3)
A 		8
(-2.7)
A 		66
(3)
A 		61
avr 8.4
(-3) 		8.8
(-2.9) 		10.3
(-2.7) 		49.3
(3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 51.1
(3)
A 		7.3
(-2.3)
A 		19.8
(-0.8)
A 		1.7
(-3)
A 		2.3
(-2.9)
A 		2.5
(-2.9)
A 		49
B 12.5
(3)
A 		2.3
(-2.7)
A 		4.9
(-1.3)
A 		2.5
(-2.6)
A 		1.8
(-3)
A 		2.8
(-2.4)
A 		11
C 8.2
(0)
A 		11
(1.2)
A 		15.1
(3)
A 		2.7
(-2.4)
A 		1.2
(-3)
A 		4.3
(-1.7)
A 		14
avr 23.9
(3) 		6.9
(-1.6) 		13.3
(0.1) 		2.3
(-2.9) 		1.8
(-3) 		3.2
(-2.6) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 1.3
(-2.6)
A 		0.5
(-3)
A 		1.6
(-2.4)
A 		11.6
(3)
M 		11
B 1.4
(-1.7)
A 		4.7
(3)
A 		3.9
(1.9)
A 		0.5
(-3)
A 		4
C 5.7
(-0.4)
A 		1.5
(-3)
A 		2.8
(-2.2)
A 		11.1
(3)
A 		10
avr 2.8
(-2.3) 		2.2
(-3) 		2.8
(-2.3) 		7.7
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 9.4
(3)
A 		2.6
(-1.5)
A 		4.3
(-0.4)
A 		0.4
(-3)
A 		0.7
(-2.8)
A 		0.6
(-2.9)
A 		9
B 4.3
(3)
A 		0.8
(-2.8)
A 		1.2
(-2.2)
A 		0.7
(-3)
A 		0.7
(-3)
A 		1.1
(-2.3)
A 		4
C 3.1
(1.8)
A 		3.4
(2.3)
A 		3.8
(3)
A 		0.6
(-2.6)
A 		0.4
(-3)
A 		1.4
(-1.2)
A 		3
avr 5.6
(3) 		2.3
(-1) 		3.1
(0) 		0.6
(-3) 		0.6
(-3) 		1
(-2.5) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183385_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9953
Sequence Type Exemplar sequence
Representative Public ID C32H11.2 NCBI
Target Description C32H11.2 /REP_DB=WormBase Gene ID /WP=CE19709 /TR=Q9XUH1 /GB=CAB05140.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070063(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070063 NCBI Caenorhabditis elegans Serpentine Receptor, class Z family member (srz-15) (srz-15) mRNA, complete cds. 11/11 None
C32H11.2 ENSEMBL cdna:known chromosome:CEL140:IV:12916013:12917263:1 gene:C32H11.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000038568 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12916018-12917269(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srz-15
Ensembl C32H11.2
Entrez Gene 183127 Entrez gene
SwissProt Q9XUH1 EMBL-EBI
WormBase CE19709 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05140 Hypothetical protein C32H11.2 [Caenorhabditis elegans] ref|NP_502464.1| Serpentine Receptor, class Z family member (srz-15) [Caenorhabditis elegans] 1.0E-168
blast AAC68997 Hypothetical protein W05E7.2 [Caenorhabditis elegans] ref|NP_500345.2| Serpentine Receptor, class Z family member (srz-32) [Caenorhabditis elegans] 9.0E-39
blast CAH60792 Hypothetical protein Y7A9C.7 [Caenorhabditis elegans] ref|NP_001023586.1| Serpentine Receptor, class Z family member (srz-72) [Caenorhabditis elegans] 2.0E-36
Protein Domains
Database ID Description E-Value
Pfam IPR003845 EMBL-EBI Protein of unknown function DUF216 2.1E-32
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502464.1 7 20-42,63-85,95-117,155-177,192-214,235-257,267-289
C32H11.2 7 20-42,63-85,95-117,155-177,192-214,235-257,267-289
Sequence
Target Sequence 
>C. ELEGANS:183385_AT
gatattgtgtttattttttgcttcaaaagatgttatgttcggaatttcctatttaatttt
ttcttgtcatgaaaactgtagcatttattgtgacattctgaaaaattcatatgtgggttt
attaatttttcaaaacattcttcttttggtacttttatatattccaattatgttgagcgt
tcgaaaattttcccatttgccggcggccagggagaatatgccagaaaaatatattctttg
gcaaaccacatcagtttttatcatgaaaatgttattattccctttcatcatcagttttct
tgccgtcagagactcctcagtacaattatctatttttgtagcatcgctatttgattttct
tggaatacctctattgattcaaatatcatatttgggatgtaaccggcggaatgtgaatgt
tctgatttcatcgttttct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATATTGTGTTTATTTTTTGCTTCA 568 427 480 Antisense
GATGTTATGTTCGGAATTTCCTATT 507 409 508 Antisense
TTGCCGGCGGCCAGGGAGAATATGC 659 687 676 Antisense
TATTCTTTGGCAAACCACATCAGTT 165 665 711 Antisense
TGTTATTATTCCCTTTCATCATCAG 16 561 749 Antisense
TTTCATCATCAGTTTTCTTGCCGTC 1 673 762 Antisense
AGTTTTCTTGCCGTCAGAGACTCCT 499 63 772 Antisense
GAGACTCCTCAGTACAATTATCTAT 509 393 788 Antisense
GATTTTCTTGGAATACCTCTATTGA 322 429 832 Antisense
ATATTTGGGATGTAACCGGCGGAAT 602 17 867 Antisense
GAATGTTCTGATTTCATCGTTTTCT 607 331 894 Antisense
Sequence Source Affymetrix Proprietary Database