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[183383_s_at]

Description B0212.4 /REP_DB=WormBase Gene ID /WP=CE27565 /TR=O45064 /GB=AAC02568.2 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 63      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 111
1 2 3 4 range
A 116
(3)
A 		41.8
(-3)
A 		97.5
(1.5)
A 		42.3
(-3)
A 		74
B 61.8
(-3)
A 		107.6
(0)
A 		152.9
(3)
A 		72.7
(-2.3)
P 		91
C 133.7
(3)
A 		70.2
(-3)
A 		82.1
(-1.9)
A 		81.2
(-2)
P 		64
avr 103.8
(2.1) 		73.2
(-2) 		110.8
(3) 		65.4
(-3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 92
1 2 3 4 5 6 range
A 49
(-3)
A 		111.9
(1.3)
A 		115.5
(1.6)
P 		82
(-0.7)
A 		135.8
(3)
A 		60.5
(-2.2)
A 		87
B 85.2
(-1.3)
A 		113.4
(0.9)
A 		68.8
(-2.6)
A 		63.1
(-3)
A 		140.8
(3)
M 		80.6
(-1.6)
A 		78
C 85.1
(-0.6)
A 		68.3
(-3)
A 		70.3
(-2.7)
A 		86.5
(-0.4)
A 		110.3
(3)
M 		99.8
(1.5)
P 		42
avr 73.1
(-3) 		97.9
(-0.3) 		84.9
(-1.7) 		77.2
(-2.6) 		129
(3) 		80.3
(-2.2) 		56
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 42.2
(3)
A 		9.1
(-2.5)
A 		25.5
(0.2)
A 		6.2
(-3)
A 		36
B 19.7
(-1.7)
A 		26.6
(0.3)
A 		35.4
(3)
A 		15.5
(-3)
P 		20
C 44.3
(3)
A 		20.2
(-1.7)
A 		28.6
(-0.1)
A 		13.7
(-3)
P 		31
avr 35.4
(3) 		18.6
(-1.3) 		29.8
(1.6) 		11.8
(-3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 9
(-3)
A 		39.8
(2.8)
A 		25.2
(0)
P 		20.8
(-0.8)
A 		41
(3)
A 		14.7
(-1.9)
A 		32
B 29.6
(-1.1)
A 		37.8
(0.1)
A 		16.7
(-3)
A 		16.7
(-3)
A 		57.2
(3)
M 		30
(-1)
A 		41
C 31.5
(1.6)
A 		20.8
(-1.9)
A 		17.9
(-2.8)
A 		17.4
(-3)
A 		35.7
(3)
M 		33.4
(2.2)
P 		18
avr 23.4
(-1.8) 		32.8
(0.3) 		19.9
(-2.6) 		18.3
(-3) 		44.6
(3) 		26
(-1.2) 		26
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183383_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11220
Sequence Type Exemplar sequence
Representative Public ID B0212.4 NCBI
Target Description B0212.4 /REP_DB=WormBase Gene ID /WP=CE27565 /TR=O45064 /GB=AAC02568.2 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026092(11), NM_171306(11), NM_067970(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026092 NCBI Caenorhabditis elegans B0212.4c (B0212.4) mRNA, complete cds. 11/11 None
NM_171306 NCBI Caenorhabditis elegans B0212.4a (B0212.4) mRNA, complete cds. 11/11 None
NM_067970 NCBI Caenorhabditis elegans B0212.4b (B0212.4) mRNA, complete cds. 11/11 None
SNAP00000040978 ENSEMBL cdna:SNAP chromosome:CEL140:IV:3543812:3545648:-1 11/11 None
GENEFINDER00000040986 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:3543812:3547588:-1 11/11 None
B0212.4c ENSEMBL cdna:known chromosome:CEL140:IV:3543687:3547596:-1 gene:B0212.4 11/11 None
B0212.4a ENSEMBL cdna:known chromosome:CEL140:IV:3543812:3547588:-1 gene:B0212.4 11/11 None
B0212.4b ENSEMBL cdna:known chromosome:CEL140:IV:3543812:3546523:-1 gene:B0212.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3543817-3545988(-) 100.0 100.0
Public Domain and Genome References
Ensembl B0212.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC02568 Hypothetical protein B0212.4a [Caenorhabditis elegans] ref|NP_741360.1| B0212.4a [Caenorhabditis elegans] 0.0
blast AAL11098 Hypothetical protein B0212.4b [Caenorhabditis elegans] ref|NP_500371.1| B0212.4b [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR007271 EMBL-EBI Nucleotide-sugar transporter 1.0E-126
Pfam IPR007271 EMBL-EBI Nucleotide-sugar transporter 1.0E-126
Pfam IPR007271 EMBL-EBI Nucleotide-sugar transporter 1.0E-126
Pfam IPR007271 EMBL-EBI Nucleotide-sugar transporter 1.0E-126
Pfam IPR007271 EMBL-EBI Nucleotide-sugar transporter 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001021263.1 6 91-108,120-142,162-184,191-213,223-240,247-269
NP_741360.1 9 30-52,67-89,110-129,139-156,161-179,189-211,231-253,263-282,315-337
NP_500371.1 9 26-48,68-90,111-130,140-157,162-180,190-212,232-254,264-283,316-338
B0212.4c 6 91-108,120-142,162-184,191-213,223-240,247-269
B0212.4a 9 30-52,67-89,110-129,139-156,161-179,189-211,231-253,263-282,315-337
B0212.4b 9 26-48,68-90,111-130,140-157,162-180,190-212,232-254,264-283,316-338
SNAP00000040978 5 53-72,82-104,124-146,156-175,208-230
GENEFINDER00000040986 9 30-52,67-89,110-129,139-156,161-179,189-211,231-253,268-290,323-345
Sequence
Target Sequence 
>C. ELEGANS:183383_S_AT
gaaatttctggatcggtgtctccgcggtggttgggatgtgctggacgagtgcgtttgccg
gtgtatactttgagaaaatgctcaaaaattcgtcggccgacgtgtggattcaaaatattc
gactatcgattttgacgctcttctttgccgggattacgatgatcactactgacggagagg
cggtttttggaggccgaatgtttgaagggtggtcaaatatggtttggctggtgacaattc
tcaactcggtcggcggattgtgtatttcgttggtcatgaagtacgcggataatgtcatga
aaacatattgtcagtcaattgcgataggcctaacatcacttgtctcaatctgcctcggcg
aacgtatcctaaccgtctatttggtgtacggagtgacacttgtgacgtcatcagtggtcg
tttactcgctgttccctgtggctccgccggctctttccgattaccataagctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAATTTCTGGATCGGTGTCTCCGC 267 363 452 Antisense
GTGCGTTTGCCGGTGTATACTTTGA 157 479 500 Antisense
AATGCTCAAAAATTCGTCGGCCGAC 406 165 528 Antisense
GTCGGCCGACGTGTGGATTCAAAAT 285 439 543 Antisense
GCTCTTCTTTGCCGGGATTACGATG 67 301 588 Antisense
CTCAACTCGGTCGGCGGATTGTGTA 325 227 691 Antisense
CGATAGGCCTAACATCACTTGTCTC 677 247 773 Antisense
TCAATCTGCCTCGGCGAACGTATCC 687 631 796 Antisense
GAACGTATCCTAACCGTCTATTTGG 685 347 811 Antisense
ATCAGTGGTCGTTTACTCGCTGTTC 572 29 861 Antisense
GGCTCTTTCCGATTACCATAAGCTC 499 539 900 Antisense
Sequence Source Affymetrix Proprietary Database