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[183382_at]

Description Y94A7B.1 /REP_DB=WormBase Gene ID /WP=CE19279 /TR=Q9XXB2 /GB=CAA19563.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 45      4grp_total > 12      6grp_cgc > 45      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 6.4
(-2.5)
A 		16
(-1.5)
A 		2
(-3)
A 		59.8
(3)
A 		58
B 17.7
(0.6)
A 		2.1
(-3)
A 		6.3
(-2)
A 		27.9
(3)
A 		26
C 18.4
(-0.2)
A 		4
(-2.9)
A 		3.6
(-3)
A 		35.6
(3)
A 		32
avr 14.2
(-1.4) 		7.4
(-2.5) 		4
(-3) 		41.1
(3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 3.9
(-2.3)
A 		1.3
(-3)
A 		26.3
(3)
A 		1.1
(-3)
A 		3.6
(-2.4)
A 		13.8
(0)
A 		25
B 21.7
(3)
A 		6.6
(-1.8)
A 		9.2
(-0.9)
A 		2.7
(-3)
A 		3
(-2.9)
A 		17.9
(1.8)
A 		19
C 3.2
(-2.8)
A 		27.5
(3)
A 		2.4
(-3)
A 		9.6
(-1.3)
A 		9.4
(-1.3)
A 		2.8
(-2.9)
A 		25
avr 9.6
(0.8) 		11.8
(2.4) 		12.6
(3) 		4.5
(-3) 		5.3
(-2.4) 		11.5
(2.2) 		8
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 2.3
(-1.7)
A 		3.5
(-0.8)
A 		0.5
(-3)
A 		8.8
(3)
A 		8
B 5.6
(2.7)
A 		0.5
(-3)
A 		1.5
(-1.9)
A 		5.9
(3)
A 		5
C 6.1
(3)
A 		1.2
(-3)
A 		1.2
(-3)
A 		6
(2.9)
A 		5
avr 4.7
(0.7) 		1.7
(-2.4) 		1.1
(-3) 		6.9
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 0.7
(-2.6)
A 		0.5
(-2.8)
A 		5.7
(3)
A 		0.3
(-3)
A 		1.1
(-2.1)
A 		3.4
(0.4)
A 		5
B 7.5
(3)
A 		2.2
(-1.7)
A 		2.2
(-1.7)
A 		0.7
(-3)
A 		1.2
(-2.6)
A 		6.7
(2.3)
A 		7
C 1.2
(-2.5)
A 		8.4
(3)
A 		0.6
(-3)
A 		1.9
(-2)
A 		3
(-1.2)
A 		0.9
(-2.8)
A 		8
avr 3.1
(1.7) 		3.7
(3) 		2.8
(1) 		1
(-3) 		1.8
(-1.2) 		3.7
(3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183382_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12998
Sequence Type Exemplar sequence
Representative Public ID Y94A7B.1 NCBI
Target Description Y94A7B.1 /REP_DB=WormBase Gene ID /WP=CE19279 /TR=Q9XXB2 /GB=CAA19563.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075093(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075093 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-292) (srh-292) mRNA, complete cds. 11/11 None
Y94A7B.1 ENSEMBL cdna:known chromosome:CEL140:V:17805345:17806499:1 gene:Y94A7B.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000042691 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17805263-17806499(+) 98.02 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srh-292
Ensembl Y94A7B.1
Entrez Gene 190790 Entrez gene
SwissProt Q9XXB2 EMBL-EBI
WormBase CE34439 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA19563 Hypothetical protein Y94A7B.1 [Caenorhabditis elegans] ref|NP_507494.2| Serpentine Receptor, class H family member (srh-292) [Caenorhabditis elegans] 1.0E-177
blast CAA19565 Hypothetical protein Y94A7B.3 [Caenorhabditis elegans] ref|NP_507495.2| Serpentine Receptor, class H family member (srh-291) [Caenorhabditis elegans] 1.0E-103
blast CAE11298 Hypothetical protein C47A10.11 [Caenorhabditis elegans] ref|NP_001023712.1| Serpentine Receptor, class H family member (srh-290) [Caenorhabditis elegans] 8.0E-90
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507494.2 7 15-34,54-76,91-110,129-151,191-213,242-264,274-296
Y94A7B.1 7 15-34,54-76,91-110,129-151,191-213,242-264,274-296
Sequence
Target Sequence 
>C. ELEGANS:183382_AT
ttccatgcatacatgctggcgctacattcgttattcatttttaacgatgaactacgtttt
gactattctttttgtaataacagtgtatgttgagatacctgaagatcaagagtttgcaag
aagtgtgttgtttaagaataatcctgagctactacaatatgatataccggaatcgccaat
tctagtgatagcatggtccaattttcgaatgatttatcgacaactccttttcacagcctt
atttctctccgagcttattgtatttacagttcttatccggttgaatatgcagaaagccat
atctgagatacggtcttcagcgtcttgtaaaacgttcaaaatacacaggaattttatgaa
aagtttgaatatgcagatcgctgtacccattgtggtcatttgtattccatcatttttcgg
tttagcagtaccattcctccaaggaaatacgcagggcgcgattaattttatttatataat
tgtatcaacacatggagcactatcgacattgatcatgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCCATGCATACATGCTGGCGCTAC 480 701 456 Antisense
GCTGGCGCTACATTCGTTATTCATT 4 295 470 Antisense
GATATACCGGAATCGCCAATTCTAG 425 421 616 Antisense
GATTTATCGACAACTCCTTTTCACA 296 429 666 Antisense
TTCTCTCCGAGCTTATTGTATTTAC 115 693 698 Antisense
GTATTTACAGTTCTTATCCGGTTGA 698 451 715 Antisense
GATACGGTCTTCAGCGTCTTGTAAA 670 421 762 Antisense
GATCGCTGTACCCATTGTGGTCATT 313 417 831 Antisense
GTATTCCATCATTTTTCGGTTTAGC 24 453 857 Antisense
TTTAGCAGTACCATTCCTCCAAGGA 83 673 876 Antisense
GGAGCACTATCGACATTGATCATGG 249 521 949 Antisense
Sequence Source Affymetrix Proprietary Database