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[183380_at]

Description F10E7.3 /REP_DB=WormBase Gene ID /WP=CE04358 /TR=Q19308 /GB=AAA82430.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 89      4grp_total > 10      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 131
1 2 3 4 range
A 1.7
(-3)
A 		47.9
(-0.9)
A 		36.1
(-1.4)
A 		132.7
(3)
P 		131
B 33.7
(0.2)
A 		40.5
(1.3)
A 		13.8
(-3)
A 		51.2
(3)
A 		37
C 36.1
(-0.7)
A 		8
(-3)
A 		21.7
(-1.9)
A 		81.4
(3)
P 		73
avr 23.8
(-3) 		32.1
(-2.2) 		23.9
(-3) 		88.4
(3) 		65

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 21.3
(-2)
A 		10.5
(-3)
A 		33.8
(-0.8)
A 		28
(-1.4)
A 		74.9
(3)
A 		49.7
(0.7)
A 		64
B 6.9
(-2.9)
A 		17.2
(-1)
A 		10.8
(-2.2)
A 		34.9
(2.4)
A 		6.5
(-3)
A 		38.2
(3)
A 		32
C 5
(-3)
A 		55.7
(3)
A 		10
(-2.4)
A 		9
(-2.5)
A 		38.3
(0.9)
A 		37.8
(0.9)
A 		51
avr 11.1
(-3) 		27.8
(0.3) 		18.2
(-1.6) 		24
(-0.5) 		39.9
(2.6) 		41.9
(3) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 0.6
(-3)
A 		10.4
(0.1)
A 		9.4
(-0.2)
A 		19.4
(3)
P 		19
B 10.7
(2.8)
A 		10
(2.3)
A 		3.2
(-3)
A 		10.9
(3)
A 		8
C 12
(2.1)
A 		2.3
(-3)
A 		7.6
(-0.2)
A 		13.7
(3)
P 		11
avr 7.8
(-2.2) 		7.6
(-2.3) 		6.7
(-3) 		14.7
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 3.9
(-2.9)
A 		3.7
(-3)
A 		7.4
(-1.8)
A 		7.1
(-1.9)
A 		22.6
(3)
A 		12.1
(-0.3)
A 		19
B 2.4
(-3)
A 		5.7
(-1.3)
A 		2.6
(-2.9)
A 		9.3
(0.5)
A 		2.7
(-2.8)
A 		14.3
(3)
A 		12
C 1.8
(-3)
A 		17
(3)
A 		2.5
(-2.7)
A 		1.8
(-3)
A 		12.4
(1.2)
A 		12.7
(1.3)
A 		15
avr 2.7
(-3) 		8.8
(0.6) 		4.2
(-2.1) 		6.1
(-1) 		12.6
(2.8) 		13
(3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183380_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4189
Sequence Type Exemplar sequence
Representative Public ID F10E7.3 NCBI
Target Description F10E7.3 /REP_DB=WormBase Gene ID /WP=CE04358 /TR=Q19308 /GB=AAA82430.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063075
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063075 NCBI Caenorhabditis elegans F10E7.3 (F10E7.3) mRNA, complete cds. None
GENEFINDER00000000744 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7122172:7127719:1 None
F10E7.3 ENSEMBL cdna:known chromosome:CEL140:II:7124587:7125248:1 gene:F10E7.3 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000000733 1/11 Cross Hyb Matching Probes None
C50B6.13 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7124582-7125692(+) 75.65 100.0
Public Domain and Genome References
Gene Title
Ensembl F10E7.3
Entrez Gene 259442 Entrez gene
SwissProt Q19308 EMBL-EBI
WormBase CE36819 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA82431 Hypothetical protein F10E7.1 [Caenorhabditis elegans] ref|NP_495477.1| F10E7.1 [Caenorhabditis elegans] 1.0E-130
blast AAA82430 Hypothetical protein F10E7.3 [Caenorhabditis elegans] ref|NP_495476.2| F10E7.3 [Caenorhabditis elegans] 9.0E-93
blast AAA82430 Hypothetical protein F10E7.3 [Caenorhabditis elegans] ref|NP_495476.2| F10E7.3 [Caenorhabditis elegans] 3.0E-40
blast AAC46658 Hypothetical protein C27H5.4a [Caenorhabditis elegans] ref|NP_001021997.1| C27H5.4a [Caenorhabditis elegans] 8.0E-36
blast AAP86617 Hypothetical protein C27H5.4b [Caenorhabditis elegans] ref|NP_001021998.1| C27H5.4b [Caenorhabditis elegans] 8.0E-36
blast AAB71280 Hypothetical protein C05E4.12 [Caenorhabditis elegans] ref|NP_503317.1| C05E4.12 [Caenorhabditis elegans] 7.0E-28
Protein Domains
Database ID Description E-Value
Pfam IPR009497 EMBL-EBI Protein of unknown function DUF1114 6.7E-122
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495476.2 3 7-26,36-58,103-125
F10E7.3 3 7-26,36-58,103-125
GENEFINDER00000000744 3 317-339,383-405,420-439
Sequence
Target Sequence 
>C. ELEGANS:183380_AT
ggcttttccaactttgttgtgttgttattgcgtgtatttcagctgcattaatggctttct
ctggatatcatttgaaagttgaaagaccaattaacgaagatcatcaattggaaaagtttc
aagagattttattcctgcttctctgggtaccaacaaatcgatttggaactcaagcagtta
ttcaatctctcaatactttatacattttcaatgttatttttattctctatgcgggtgtga
ataatatcacagcaatagcagtttttaaatattattttggaaaacttcaaaaaaactcaa
gagatttttttaaaatggtaactttgatatttggattcactataggagtggttttaaact
tttttcacactgacaatttttgcagtaatttttttcagcgctatttctcgtttgcgtttt
ttttccacttctacgactttaaaggggcgcatttacgcgctatggtgcttgagattggtc
tcgccatgcgccccaaaaaccaatgggtttcgcgtgtcgagaccatcgcgcgtaaatgcg
cccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCTTTTCCAACTTTGTTGTGTTGT 465 537 122 Antisense
TTCAAGAGATTTTATTCCTGCTTCT 290 685 239 Antisense
TCAATCTCTCAATACTTTATACATT 429 633 303 Antisense
TATTTTTATTCTCTATGCGGGTGTG 154 659 336 Antisense
TTTGCAGTAATTTTTTTCAGCGCTA 598 667 500 Antisense
TTCAGCGCTATTTCTCGTTTGCGTT 258 687 515 Antisense
GGGGCGCATTTACGCGCTATGGTGC 85 499 565 Antisense
GTGCTTGAGATTGGTCTCGCCATGC 333 479 586 Antisense
GCCATGCGCCCCAAAAACCAATGGG 559 279 604 Antisense
ATGGGTTTCGCGTGTCGAGACCATC 219 45 624 Antisense
AGACCATCGCGCGTAAATGCGCCCC 281 71 641 Antisense
Sequence Source Affymetrix Proprietary Database