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[183379_at]

Description K01D12.9 /REP_DB=WormBase Gene ID /WP=CE06048 /TR=Q21089 /GB=CAA99865.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 43      6grp_total > 10      4grp_total > 56      6grp_high1_sub > 02      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1946
1 2 3 4 range
A 17.1
(-3)
A 		1533.3
(2.2)
P 		1782.1
(3)
P 		12.7
(-3)
A 		1769
B 27.5
(-3)
A 		1222.5
(0.7)
P 		1958.3
(3)
P 		110.4
(-2.7)
M 		1931
C 19.4
(-3)
A 		1342.2
(1.2)
P 		1922
(3)
P 		50.6
(-2.9)
P 		1903
avr 21.3
(-3) 		1366
(1.3) 		1887.5
(3) 		57.9
(-2.9) 		1866

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 357
1 2 3 4 5 6 range
A 71.5
(-2.6)
A 		405.8
(3)
P 		227.6
(0)
P 		181.4
(-0.8)
P 		49.2
(-3)
M 		117.9
(-1.8)
P 		357
B 70.6
(-3)
P 		389.1
(3)
P 		234.7
(0.1)
P 		156.4
(-1.4)
P 		154
(-1.4)
P 		77.3
(-2.9)
P 		319
C 69.4
(-3)
P 		406.6
(3)
P 		222.9
(-0.3)
P 		212.8
(-0.4)
P 		117.7
(-2.1)
P 		123.6
(-2)
P 		337
avr 70.5
(-3) 		400.5
(3) 		228.4
(-0.1) 		183.5
(-0.9) 		107
(-2.3) 		106.3
(-2.3) 		330
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 668
1 2 3 4 range
A 6.2
(-2.9)
A 		332.8
(1.3)
P 		465.9
(3)
P 		1.9
(-3)
A 		464
B 8.8
(-3)
A 		301.9
(1)
P 		453.8
(3)
P 		23.5
(-2.8)
M 		445
C 6.4
(-3)
A 		385.9
(0.4)
P 		669.9
(3)
P 		8.5
(-3)
P 		664
avr 7.1
(-3) 		340.2
(0.8) 		529.9
(3) 		11.3
(-3) 		523

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 131
1 2 3 4 5 6 range
A 13.2
(-3)
A 		144.3
(3)
P 		49.6
(-1.3)
P 		46
(-1.5)
P 		14.9
(-2.9)
M 		28.7
(-2.3)
P 		131
B 24.6
(-3)
P 		129.5
(3)
P 		57
(-1.1)
P 		41.4
(-2)
P 		62.6
(-0.8)
P 		28.8
(-2.8)
P 		105
C 25.7
(-3)
P 		124.1
(3)
P 		56.7
(-1.1)
P 		42.8
(-2)
P 		38.1
(-2.2)
P 		41.4
(-2)
P 		98
avr 21.2
(-3) 		132.6
(3) 		54.4
(-1.2) 		43.4
(-1.8) 		38.5
(-2.1) 		33
(-2.4) 		111
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183379_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13338
Sequence Type Exemplar sequence
Representative Public ID K01D12.9 NCBI
Target Description K01D12.9 /REP_DB=WormBase Gene ID /WP=CE06048 /TR=Q21089 /GB=CAA99865.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073707(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073707 NCBI Caenorhabditis elegans K01D12.9 (K01D12.9) mRNA, complete cds. 11/11 None
SNAP00000007096 ENSEMBL cdna:SNAP chromosome:CEL140:V:12406735:12407218:-1 11/11 None
GENEFINDER00000007104 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12406735:12407429:-1 11/11 None
K01D12.9 ENSEMBL cdna:known chromosome:CEL140:V:12406735:12407218:-1 gene:K01D12.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12406734-12407218(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K01D12.9
Entrez Gene 186847 Entrez gene
SwissProt Q21089 EMBL-EBI
WormBase CE06048 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA99865 Hypothetical protein K01D12.9 [Caenorhabditis elegans] ref|NP_506108.1| K01D12.9 [Caenorhabditis elegans] 4.0E-37
blast CAA99865 Hypothetical protein K01D12.9 [Caenorhabditis elegans] ref|NP_506108.1| K01D12.9 [Caenorhabditis elegans] 3.0E-32
blast CAE69631 Hypothetical protein CBG15872 [Caenorhabditis briggsae] 3.0E-30
blast CAE75475 Hypothetical protein CBG23478 [Caenorhabditis briggsae] 2.0E-29
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000007104 1 30-52
Sequence
Target Sequence 
>C. ELEGANS:183379_AT
tatcattattttcggtcttctggctgttgccttggcatgtgccccacatatgccaaagag
agaggttcaacacggatactgcaagttctacgttgatggaaagagtgacacttcggatgc
tcgtaagaagagagattctggaagtggatccggatctggagaaggaggaaagggtggtgg
taagaagtacaaccgttccaagaagagaaaggacaccaaatgttacgagtatgaagatgg
aaccaaggatgagggagctgttctcaatgaaggagttact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATCATTATTTTCGGTCTTCTGGCT 13 661 33 Antisense
TTCTGGCTGTTGCCTTGGCATGTGC 239 695 50 Antisense
GAGAGGTTCAACACGGATACTGCAA 221 395 92 Antisense
GATACTGCAAGTTCTACGTTGATGG 17 425 107 Antisense
AAGAGTGACACTTCGGATGCTCGTA 272 155 133 Antisense
GTGACACTTCGGATGCTCGTAAGAA 245 483 137 Antisense
TGGTAAGAAGTACAACCGTTCCAAG 421 259 210 Antisense
GAAGTACAACCGTTCCAAGAAGAGA 520 335 216 Antisense
GAGAAAGGACACCAAATGTTACGAG 140 393 237 Antisense
AACCAAGGATGAGGGAGCTGTTCTC 126 149 273 Antisense
AGCTGTTCTCAATGAAGGAGTTACT 225 79 288 Antisense
Sequence Source Affymetrix Proprietary Database