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[183378_at]

Description F55G11.8 /REP_DB=WormBase Gene ID /WP=CE18754 /TR=Q9XUD6 /GB=CAB05220.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 60      6grp_total > 60      4grp_total > 61      6grp_high1_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 897
1 2 3 4 range
A 889.7
(2.3)
P 		601.1
(0.3)
P 		988.3
(3)
P 		124.9
(-3)
A 		863
B 987.2
(3)
P 		532.9
(-0)
P 		714.2
(1.2)
P 		91.7
(-3)
A 		896
C 784.7
(3)
P 		526.2
(0.6)
P 		771.8
(2.9)
P 		144.3
(-3)
A 		640
avr 887.2
(3) 		553.4
(0.4) 		824.8
(2.5) 		120.3
(-3) 		767

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 217
1 2 3 4 5 6 range
A 239.1
(-0.1)
P 		156.8
(-2.6)
M 		268.3
(0.8)
P 		342.2
(3)
P 		142.8
(-3)
A 		162.6
(-2.4)
A 		199
B 206.5
(-0)
P 		125.6
(-3)
A 		288.3
(3)
P 		283.5
(2.8)
P 		194.2
(-0.5)
P 		170.5
(-1.3)
P 		163
C 220.4
(0.4)
P 		169.4
(-1.5)
P 		215.5
(0.2)
P 		288.8
(3)
P 		130.8
(-3)
P 		166.6
(-1.6)
P 		158
avr 222
(-0.2) 		150.6
(-3) 		257.4
(1.2) 		304.8
(3) 		155.9
(-2.8) 		166.6
(-2.4) 		154
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 306
1 2 3 4 range
A 323.9
(3)
P 		130.5
(-0.8)
P 		258.4
(1.7)
P 		18.3
(-3)
A 		306
B 314.8
(3)
P 		131.6
(-0.7)
P 		165.5
(-0)
P 		19.5
(-3)
A 		295
C 259.8
(2.8)
P 		151.3
(0.1)
P 		269
(3)
P 		24.3
(-3)
A 		245
avr 299.5
(3) 		137.8
(-0.5) 		231
(1.5) 		20.7
(-3) 		279

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 44.1
(-2.4)
P 		55.8
(-0.9)
M 		58.4
(-0.6)
P 		86.8
(3)
P 		43.1
(-2.6)
A 		39.6
(-3)
A 		47
B 71.8
(1.9)
P 		41.8
(-3)
A 		70
(1.6)
P 		75.1
(2.4)
P 		78.9
(3)
P 		63.6
(0.5)
P 		37
C 81.7
(3)
P 		51.7
(-1.6)
P 		54.8
(-1.1)
P 		58.1
(-0.6)
P 		42.3
(-3)
P 		55.8
(-0.9)
P 		39
avr 65.9
(1.1) 		49.8
(-3) 		61.1
(-0.1) 		73.3
(3) 		54.8
(-1.7) 		53
(-2.2) 		24
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183378_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10016
Sequence Type Exemplar sequence
Representative Public ID F55G11.8 NCBI
Target Description F55G11.8 /REP_DB=WormBase Gene ID /WP=CE18754 /TR=Q9XUD6 /GB=CAB05220.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070080(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070080 NCBI Caenorhabditis elegans F55G11.8 (F55G11.8) mRNA, complete cds. 11/11 None
SNAP00000016142 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12960506:12964552:1 11/11 None
GENEFINDER00000016155 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12958000:12967213:1 11/11 None
F55G11.8 ENSEMBL cdna:known chromosome:CEL140:IV:12962778:12964556:1 gene:F55G11.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12962858-12964558(+) 99.71 100.0
Public Domain and Genome References
Gene Title
Ensembl F55G11.8
Entrez Gene 186340 Entrez gene
SwissProt Q9XUD6 EMBL-EBI
WormBase CE18754 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05220 Hypothetical protein F55G11.8 [Caenorhabditis elegans] ref|NP_502481.1| F55G11.8 [Caenorhabditis elegans] 0.0
blast CAB05221 Hypothetical protein F55G11.7 [Caenorhabditis elegans] ref|NP_502480.1| F55G11.7 [Caenorhabditis elegans] 0.0
blast CAB05216 Hypothetical protein F55G11.5 [Caenorhabditis elegans] ref|NP_502482.1| Downstream Of DAF-16 (regulated by DAF-16) family member (dod-22) [Caenorhabditis elegans] 0.0
blast CAB05215 Hypothetical protein F55G11.6 [Caenorhabditis elegans] ref|NP_502479.1| F55G11.6 [Caenorhabditis elegans] 1.0E-152
blast CAB03527 Hypothetical protein F55G11.4 [Caenorhabditis elegans] emb|CAB05224.1| Hypothetical protein F55G11.4 [Caenorhabditis elegans] ref|NP_502485.1| F55G11.4 [Caenorhabditis elegans] 1.0E-139
Protein Domains
Database ID Description E-Value
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 2.0E-50
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 9.7E-48
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 2.9E-48
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 2.6E-48
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 9.7E-48
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 2.0E-50
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 4.5E-50
Sequence
Target Sequence 
>C. ELEGANS:183378_AT
gtggactcactttaatggccttccctgcagacgataaaaaatatcattcgttgagaagcg
ctctcatattcgaaggaaatggtctgcaaagtggaaactacatttcgaatctttacttac
tctaccagtcgaagaagcaatgggtatcaagtcaagacagtattgtaatagtgaacctcg
acgctagtcaggttaacgataaacttctcatccaagcatctagatacttgactggaatca
gtgagacggtggaaatccacccgcagttgaactcaacctataatgtaactgtaaacggag
ggacacgcatgtcttctcttgttgctgtttccgatatcacaatgcacatggttgatgttc
agatgaaagatgaatctaccgtcacagtctacgatggttctccaagcgcatttacatttg
ataaaacctataccaaaacacaacttaagaacgcattcccactgtcgttcggcggatatt
ttgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGGACTCACTTTAATGGCCTTCCC 324 491 506 Antisense
GAGAAGCGCTCTCATATTCGAAGGA 25 393 558 Antisense
GAATCTTTACTTACTCTACCAGTCG 189 327 612 Antisense
AATAGTGAACCTCGACGCTAGTCAG 143 169 672 Antisense
GATAAACTTCTCATCCAAGCATCTA 403 423 703 Antisense
TCCACCCGCAGTTGAACTCAACCTA 319 587 761 Antisense
TCTCTTGTTGCTGTTTCCGATATCA 118 613 820 Antisense
GAATCTACCGTCACAGTCTACGATG 296 327 877 Antisense
TGGTTCTCCAAGCGCATTTACATTT 210 551 900 Antisense
TTAAGAACGCATTCCCACTGTCGTT 407 683 950 Antisense
CACTGTCGTTCGGCGGATATTTTGT 605 197 965 Antisense
Sequence Source Affymetrix Proprietary Database