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[183375_at]

Description T16G1.10 /REP_DB=WormBase Gene ID /WP=CE20080 /TR=Q9XUP4 /GB=CAB04731.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 33      6grp_high1_10_10 > 23      4grp_highest_8_8 > 23      4grp_high_8_8 > 06      6grp_highest_nonorm > 71      6grp_total > 22      4grp_total > 02      6grp_highest_sub > 02      6grp_cgc > 62      6grp_high1_sub > 02      6grp_cgc_sub > 02      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 299
1 2 3 4 range
A 237.2
(-2.4)
P 		206.9
(-3)
P 		211.8
(-2.9)
P 		506.2
(3)
P 		299
B 294.9
(-0.6)
P 		229.4
(-3)
P 		278
(-1.2)
P 		395.9
(3)
P 		167
C 263.8
(-2.9)
P 		316.8
(-1.2)
P 		258.9
(-3)
P 		455.1
(3)
P 		196
avr 265.3
(-2.5) 		251
(-3) 		249.6
(-3) 		452.4
(3) 		203

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 211
1 2 3 4 5 6 range
A 349
(1.2)
P 		315.9
(0.2)
P 		410.9
(3)
P 		296.9
(-0.3)
P 		203.7
(-3)
P 		253.3
(-1.6)
P 		207
B 353.3
(1.9)
P 		378.4
(3)
P 		300.9
(-0.3)
P 		248.7
(-2.4)
P 		286.4
(-0.9)
P 		235.6
(-3)
P 		143
C 255
(-1.9)
P 		414.7
(3)
P 		273.8
(-1.3)
P 		363.6
(1.4)
P 		218.1
(-3)
P 		255.1
(-1.9)
P 		197
avr 319.1
(0.7) 		369.7
(3) 		328.5
(1.1) 		303.1
(0) 		236.1
(-3) 		248
(-2.5) 		134
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 86.4
(3)
P 		44.9
(-3)
P 		55.4
(-1.5)
P 		74.1
(1.2)
P 		42
B 94.1
(3)
P 		56.7
(-3)
P 		64.4
(-1.8)
P 		84.4
(1.4)
P 		37
C 87.3
(1.4)
P 		91.1
(3)
P 		90.2
(2.6)
P 		76.7
(-3)
P 		14
avr 89.3
(3) 		64.2
(-3) 		70
(-1.6) 		78.4
(0.4) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 64.3
(-2.7)
P 		112.4
(3)
P 		89.5
(0.3)
P 		75.3
(-1.4)
P 		61.5
(-3)
P 		61.7
(-3)
P 		51
B 122.9
(2.7)
P 		126
(3)
P 		73.1
(-2.3)
P 		65.9
(-3)
P 		116.3
(2)
P 		87.8
(-0.8)
P 		60
C 94.5
(-0.4)
P 		126.5
(3)
P 		69.7
(-3)
P 		73.1
(-2.6)
P 		70.6
(-2.9)
P 		85.4
(-1.3)
P 		57
avr 93.9
(-0.3) 		121.6
(3) 		77.4
(-2.3) 		71.4
(-3) 		82.8
(-1.6) 		78.3
(-2.2) 		50
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183375_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13314
Sequence Type Exemplar sequence
Representative Public ID T16G1.10 NCBI
Target Description T16G1.10 /REP_DB=WormBase Gene ID /WP=CE20080 /TR=Q9XUP4 /GB=CAB04731.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073839(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073839 NCBI Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-68) (pqn-68) mRNA, complete cds. 11/11 None
SNAP00000020374 ENSEMBL cdna:SNAP chromosome:CEL140:V:12955228:12955778:1 11/11 None
GENEFINDER00000020387 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12955228:12955778:1 11/11 None
T16G1.10 ENSEMBL cdna:known chromosome:CEL140:V:12955228:12955778:1 gene:T16G1.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12955227-12955778(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol pqn-68
Ensembl T16G1.10
Entrez Gene 188555 Entrez gene
SwissProt Q9XUP4 EMBL-EBI
WormBase CE20080 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:254676_AT D-Tyr-tRNA(Tyr) deacylase family protein at
CANINE:1584442_AT similar to Probable D-tyrosyl-tRNA(Tyr) deacylase cfa
CANINE_2:CFA.20772.1.S1_S_AT similar to Probable D-tyrosyl-tRNA(Tyr) deacylase cfa
CANINE_2:CFA.4326.1.A1_AT similar to Probable D-tyrosyl-tRNA(Tyr) deacylase cfa
DROSOPHILA_2:1638845_AT dm
DROSGENOME1:149686_AT dm
CHICKEN:GGA.9939.1.S1_A_AT histidyl-tRNA synthetase 2 gga
HU35KSUBC:RC_AA476629_I_AT histidyl-tRNA synthetase 2 hs
HU35KSUBC:RC_AA476629_S_AT histidyl-tRNA synthetase 2 hs
U133_X3P:HS2.352419.1.S1_3P_AT histidyl-tRNA synthetase 2 hs
U133_X3P:HS.306024.2.A1_3P_A_AT histidyl-tRNA synthetase 2 hs
HG-U133_PLUS_2:1552718_AT histidyl-tRNA synthetase 2 hs
HG-U133_PLUS_2:234107_S_AT histidyl-tRNA synthetase 2 hs
HG-U133B:234107_S_AT histidyl-tRNA synthetase 2 hs
U133_X3P:HS2.437178.1.S1_3P_AT Histidyl-tRNA synthetase 2 hs
U133_X3P:HS2.384930.1.S1_3P_AT Histidyl-tRNA synthetase 2 hs
HG-U133_PLUS_2:1561459_AT Histidyl-tRNA synthetase 2 hs
HG-U133_PLUS_2:1567000_AT Histidyl-tRNA synthetase 2 hs
HG-U133_PLUS_2:1566999_AT Histidyl-tRNA synthetase 2 hs
HG-U133_PLUS_2:244207_AT Histidyl-tRNA synthetase 2 hs
HG-U133B:244207_AT Histidyl-tRNA synthetase 2 hs
HG-U95D:84747_AT Histidyl-tRNA synthetase 2 hs
HG-U95D:90571_AT Histidyl-tRNA synthetase 2 hs
U133_X3P:HS.165696.0.A1_3P_AT Histidyl-tRNA synthetase 2 hs
MU11KSUBA:R75048_RC_AT histidyl tRNA synthetase 2 mm
MG-U74AV2:97318_AT histidyl tRNA synthetase 2 mm
MOE430A:1451040_AT histidyl tRNA synthetase 2 mm
MOUSE430A_2:1451040_AT histidyl tRNA synthetase 2 mm
MOUSE430_2:1451040_AT histidyl tRNA synthetase 2 mm
MOE430B:1447677_X_AT histidyl tRNA synthetase 2 mm
MOUSE430_2:1447677_X_AT histidyl tRNA synthetase 2 mm
MOUSE430_2:1446462_AT Histidyl tRNA synthetase 2, mRNA (cDNA clone MGC:35777 IMAGE:5008303) mm
MOE430B:1446462_AT Histidyl tRNA synthetase 2, mRNA (cDNA clone MGC:35777 IMAGE:5008303) mm
MU19KSUBA:TC18056_AT Histidyl tRNA synthetase 2, mRNA (cDNA clone MGC:35777 IMAGE:5008303) mm
MU19KSUBB:TC26036_AT Histidyl tRNA synthetase 2, mRNA (cDNA clone MGC:35777 IMAGE:5008303) mm
RT-U34:RC_AI233365_AT histidyl tRNA synthetase 2 (predicted) rn
RG-U34A:RC_AI233365_AT histidyl tRNA synthetase 2 (predicted) rn
RAE230A:1388428_AT histidyl tRNA synthetase 2 (predicted) rn
RAT230_2:1388428_AT histidyl tRNA synthetase 2 (predicted) rn
YEAST_2:1779334_AT D-Tyr-tRNA(Tyr) deacylase, functions in protein translation, may affect nonsense suppression via alteration of the protein synthesis machinery; ubiquitous among eukaryotes Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
19478 D-amino acid catabolism inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5737 cytoplasm inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16788 hydrolase activity, acting on ester bonds inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04731 Hypothetical protein T16G1.10 [Caenorhabditis elegans] ref|NP_506240.1| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-68) [Caenorhabditis elegans] 6.0E-80
blast CAE64710 Hypothetical protein CBG09496 [Caenorhabditis briggsae] 1.0E-75
blast XP_796744 PREDICTED: similar to Probable D-tyrosyl-tRNA(Tyr) deacylase [Strongylocentrotus purpuratus] 4.0E-44
Protein Domains
Database ID Description E-Value
Pfam IPR003732 EMBL-EBI D-tyrosyl-tRNA(Tyr) deacylase 1.3E-70
Sequence
Target Sequence 
>C. ELEGANS:183375_AT
ggtagttcttcaacgagttactcgagctgcagtcaccgtaggtgatgaagtggtaggttc
cattggaagaggtctgtgtgtgcttgtcggagttcatcgagatgacacggaagaggatat
gaagtatatcattaggaaaattttgaatctacgagttttccctgcttcggaacaaaaacc
atgggataaatcagttatggatctcgatttagaagtgctgtctgtcagtcagttcaccct
ttacggtcagtttaaaggaaataaactggactttcataccgcaatggccccaacagaagc
ttcaaaattttatgcttcttttcttgaagccatgaaaaaagcttacaaagctgataagat
tcaggacggcaaatttgcagcaatgatgagcgtcgata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTAGTTCTTCAACGAGTTACTCGA 42 497 18 Antisense
AACGAGTTACTCGAGCTGCAGTCAC 292 145 29 Antisense
TCGAGCTGCAGTCACCGTAGGTGAT 627 601 39 Antisense
GGAAGAGGTCTGTGTGTGCTTGTCG 371 531 82 Antisense
GTGTGCTTGTCGGAGTTCATCGAGA 642 487 95 Antisense
TTGAATCTACGAGTTTTCCCTGCTT 359 699 160 Antisense
CCCTGCTTCGGAACAAAAACCATGG 61 261 177 Antisense
TTAGAAGTGCTGTCTGTCAGTCAGT 592 681 226 Antisense
AACTGGACTTTCATACCGCAATGGC 353 141 281 Antisense
CAAAATTTTATGCTTCTTTTCTTGA 116 189 320 Antisense
TTTGCAGCAATGATGAGCGTCGATA 64 667 391 Antisense
Sequence Source Affymetrix Proprietary Database