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[183374_at]

Description T07G12.8 /REP_DB=WormBase Gene ID /WP=CE13401 /TR=O18060 /GB=CAB05273.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 46      4grp_total > 12      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 133
1 2 3 4 range
A 50.3
(-1.3)
A 		33.5
(-2.1)
A 		13
(-3)
A 		144
(3)
A 		131
B 11.7
(-2.9)
A 		32.9
(3)
A 		18.1
(-1.1)
A 		11.3
(-3)
A 		22
C 51.3
(-1.2)
A 		25.7
(-2.7)
A 		21.5
(-3)
A 		119.8
(3)
A 		98
avr 37.8
(-1.4) 		30.7
(-1.9) 		17.5
(-3) 		91.7
(3) 		74

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 83
1 2 3 4 5 6 range
A 41.1
(-0.8)
A 		75.6
(1.9)
A 		73.6
(1.7)
A 		27
(-1.8)
A 		11.4
(-3)
A 		90.7
(3)
A 		79
B 63.7
(2.6)
A 		66.9
(3)
A 		47
(0.5)
A 		19.3
(-3)
A 		31.3
(-1.5)
A 		41.6
(-0.2)
A 		48
C 92.8
(3)
A 		71.5
(1.5)
A 		37
(-1)
A 		57.6
(0.5)
A 		9.7
(-3)
A 		65.1
(1)
A 		83
avr 65.9
(2.4) 		71.3
(3) 		52.5
(0.9) 		34.6
(-1.1) 		17.5
(-3) 		65.8
(2.4) 		54
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 18.3
(2.1)
A 		7.3
(-1.7)
A 		3.4
(-3)
A 		21.1
(3)
A 		18
B 3.7
(-1.6)
A 		8.1
(3)
A 		4.2
(-1.1)
A 		2.4
(-3)
A 		6
C 17
(1.5)
A 		7.4
(-3)
A 		7.5
(-3)
A 		20.2
(3)
A 		13
avr 13
(2) 		7.6
(-1.4) 		5
(-3) 		14.6
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 7.6
(-1.9)
A 		26.9
(3)
A 		16
(0.2)
A 		6.8
(-2.1)
A 		3.4
(-3)
A 		22.1
(1.8)
A 		24
B 22.2
(3)
A 		22.3
(3)
A 		11.4
(-0.8)
A 		5.1
(-3)
A 		12.7
(-0.3)
A 		15.5
(0.6)
A 		17
C 34.4
(3)
A 		21.8
(0.6)
A 		9.4
(-1.8)
A 		11.6
(-1.4)
A 		3.1
(-3)
A 		21.8
(0.6)
A 		31
avr 21.4
(2.2) 		23.7
(3) 		12.3
(-1) 		7.8
(-2.5) 		6.4
(-3) 		19.8
(1.6) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183374_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10152
Sequence Type Exemplar sequence
Representative Public ID T07G12.8 NCBI
Target Description T07G12.8 /REP_DB=WormBase Gene ID /WP=CE13401 /TR=O18060 /GB=CAB05273.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069549(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069549 NCBI Caenorhabditis elegans T07G12.8 (T07G12.8) mRNA, complete cds. 11/11 A 
T07G12.8 ENSEMBL cdna:known chromosome:CEL140:IV:10553453:10554140:1 gene:T07G12.8 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_065847 2/11 Cross Hyb Matching Probes A 
GENEFINDER00000002445 3/11 Cross Hyb Matching Probes None
SNAP00000019667 2/11 Cross Hyb Matching Probes None
GENEFINDER00000026272 3/11 Cross Hyb Matching Probes None
SNAP00000001392 2/11 Cross Hyb Matching Probes None
Y37B11A.2 2/11 Cross Hyb Matching Probes A 
Y75B12A.1 1/11 Cross Hyb Matching Probes B 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6505189-6505657(+) 78.6 92.12
chrIV:10553654-10554146(+) 86.49 100.0
Public Domain and Genome References
Gene Title
Ensembl T07G12.8
Entrez Gene 177947 Entrez gene
SwissProt O18060 EMBL-EBI
WormBase CE13401 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05273 Hypothetical protein T07G12.8 [Caenorhabditis elegans] ref|NP_501950.1| T07G12.8 [Caenorhabditis elegans] 1.0E-72
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501950.1 1 45-67
T07G12.8 1 45-67
Sequence
Target Sequence 
>C. ELEGANS:183374_AT
ggactgtgatatttgtcaactcgacgattattcatcaccgacttcaacaatcaccgactc
ctgccgcctcgtcgcctcggaacgtgtcatctgcatcgacaaacccgtccccatccgaat
aattttctattttttttcaaattttattttatttttttataaaataaaaatttttatgaa
ctatcaattgttattaaggaaccgcaaatttcaatatatggcgaataacggggtgccagc
tagctgggcattcggagcgtcctcatcatttaccggtccgtttttcgcgagttcttcatc
gaatagcggcccgcgccttcaccaaagccatgtaccgttttcgcgaaatagcggcccgtc
acccgacgaatattcgcatgacgcggtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGACTGTGATATTTGTCAACTCGAC 132 525 39 Antisense
CCTCGGAACGTGTCATCTGCATCGA 42 267 113 Antisense
CGTGTCATCTGCATCGACAAACCCG 216 245 121 Antisense
GGAACCGCAAATTTCAATATATGGC 90 529 236 Antisense
GCGAATAACGGGGTGCCAGCTAGCT 131 289 259 Antisense
GGGTGCCAGCTAGCTGGGCATTCGG 123 497 269 Antisense
TCATCATTTACCGGTCCGTTTTTCG 621 611 301 Antisense
TTCACCAAAGCCATGTACCGTTTTC 411 685 356 Antisense
TTTTCGCGAAATAGCGGCCCGTCAC 54 671 376 Antisense
CCCGTCACCCGACGAATATTCGCAT 658 259 393 Antisense
CGACGAATATTCGCATGACGCGGTT 238 251 402 Antisense
Sequence Source Affymetrix Proprietary Database