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[183373_at]

Description F55B12.2 /REP_DB=WormBase Gene ID /WP=CE11136 /TR=Q93792 /GB=CAB02123.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 50      4grp_total > 19      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 10.4
(-3)
A 		21
(-1.8)
A 		10.4
(-3)
A 		63.2
(3)
A 		53
B 6.1
(-3)
A 		37.3
(3)
A 		9.6
(-2.3)
A 		28.5
(1.3)
A 		31
C 24.5
(-0.9)
A 		30.5
(-0.3)
A 		3.4
(-3)
A 		63.6
(3)
A 		60
avr 13.7
(-2.2) 		29.6
(-0) 		7.8
(-3) 		51.8
(3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 16
(1.8)
A 		3.4
(-2.4)
A 		12
(0.5)
A 		19.5
(3)
A 		1.7
(-3)
A 		6.2
(-1.5)
A 		18
B 25
(0.3)
A 		43.4
(3)
A 		24.3
(0.2)
A 		10.9
(-1.8)
A 		6.6
(-2.4)
A 		2.4
(-3)
A 		41
C 26
(-1.3)
A 		23.8
(-1.5)
A 		10.5
(-2.7)
A 		73.3
(3)
A 		7.3
(-3)
A 		12.5
(-2.5)
A 		66
avr 22.3
(0.5) 		23.5
(0.7) 		15.6
(-0.9) 		34.6
(3) 		5.2
(-3) 		7
(-2.6) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 3.8
(-2)
A 		4.6
(-1.3)
A 		2.7
(-3)
A 		9.3
(3)
A 		7
B 1.9
(-3)
A 		9.2
(3)
A 		2.2
(-2.8)
A 		6.1
(0.5)
A 		7
C 8.1
(1.4)
A 		8.8
(1.8)
A 		1.2
(-3)
A 		10.7
(3)
A 		10
avr 4.6
(-0.7) 		7.5
(1.9) 		2
(-3) 		8.7
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 3
(0.3)
A 		1.2
(-2.1)
A 		2.6
(-0.2)
A 		5
(3)
A 		0.5
(-3)
A 		1.5
(-1.7)
A 		5
B 8.7
(0.4)
A 		14.5
(3)
A 		5.9
(-0.8)
A 		2.9
(-2.1)
A 		2.7
(-2.2)
A 		0.9
(-3)
A 		14
C 9.6
(0.5)
A 		7.2
(-0.7)
A 		2.7
(-2.9)
A 		14.7
(3)
A 		2.4
(-3)
A 		4.2
(-2.1)
A 		12
avr 7.1
(2.5) 		7.6
(3) 		3.7
(-1.1) 		7.5
(2.9) 		1.9
(-3) 		2.2
(-2.7) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183373_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13312
Sequence Type Exemplar sequence
Representative Public ID F55B12.2 NCBI
Target Description F55B12.2 /REP_DB=WormBase Gene ID /WP=CE11136 /TR=Q93792 /GB=CAB02123.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074019(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074019 NCBI Caenorhabditis elegans F55B12.2 (F55B12.2) mRNA, complete cds. 9/11 None
SNAP00000009639 ENSEMBL cdna:SNAP chromosome:CEL140:V:13817963:13819572:-1 9/11 None
GENEFINDER00000009648 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13817963:13819572:-1 9/11 None
F55B12.2 ENSEMBL cdna:known chromosome:CEL140:V:13817963:13819566:-1 gene:F55B12.2 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13817962-13819566(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F55B12.2
Entrez Gene 186281 Entrez gene
SwissProt Q93792 EMBL-EBI
WormBase CE35880 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02123 Hypothetical protein F55B12.2 [Caenorhabditis elegans] ref|NP_506420.3| F55B12.2 [Caenorhabditis elegans] 0.0
blast CAB02123 Hypothetical protein F55B12.2 [Caenorhabditis elegans] ref|NP_506420.3| F55B12.2 [Caenorhabditis elegans] 1.0E-123
blast NP_504940 C54F6.3 [Caenorhabditis elegans] gb|AAG24008.1| Hypothetical protein C54F6.3 [Caenorhabditis elegans] 6.0E-75
blast CAE57791 Hypothetical protein CBG00814 [Caenorhabditis briggsae] 1.0E-71
Protein Domains
Database ID Description E-Value
Pfam IPR007669 EMBL-EBI Protein of unknown function DUF595 1.0E-126
Pfam IPR007669 EMBL-EBI Protein of unknown function DUF595 1.7E-112
Pfam IPR007669 EMBL-EBI Protein of unknown function DUF595 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506420.3 1 28-47
F55B12.2 1 28-47
GENEFINDER00000009648 1 30-49
Sequence
Target Sequence 
>C. ELEGANS:183373_AT
caaaatttgcgttcatccgggatccctttgatagattcatctcattctatttgcacgttt
gtaaaaatgacaatggatgctgggattgcggtgacaatatgcgatgtgttgtgagaaatg
tgtataaaagtctgaaaagttatgagaatgacccagatgaagcttcgtcgtcttcgatag
acagacatgccgcgccaattacatggaactgtaacttccaagaaaccttctcacaatatc
acctcattaaaattggcttcgactatcaaagtagacatgctgcaattactcaactcacag
atattctatacacaaatcgtgtttctgacacacttattaccaagatctcaaacgaatcaa
tgagtaagatttttaccttatacctacagtggcaatgtctagtttcagctggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAAATTTGCGTTCATCCGGGATCC 84 191 326 Antisense
GGGATCCCTTTGATAGATTCATCTC 559 495 344 Antisense
GATTCATCTCATTCTATTTGCACGT 392 431 359 Antisense
TGACCCAGATGAAGCTTCGTCGTCT 107 571 474 Antisense
TTCGATAGACAGACATGCCGCGCCA 389 695 498 Antisense
ATGCCGCGCCAATTACATGGAACTG 363 39 512 Antisense
GTAACTTCCAAGAAACCTTCTCACA 415 461 536 Antisense
CCTTCTCACAATATCACCTCATTAA 590 269 551 Antisense
GACATGCTGCAATTACTCAACTCAC 482 369 599 Antisense
AGATTTTTACCTTATACCTACAGTG 79 61 692 Antisense
GTGGCAATGTCTAGTTTCAGCTGGT 547 491 714 Antisense
Sequence Source Affymetrix Proprietary Database