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[183372_at]

Description Y39B6B.B /REP_DB=WormBase Gene ID /WP=CE21671 /TR=Q9NEV7 /GB=CAB60907.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 26      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 85
1 2 3 4 range
A 19
(-0.9)
A 		42.2
(3)
A 		13.2
(-1.9)
A 		6.5
(-3)
A 		36
B 5.4
(-3)
A 		9.7
(-1.9)
A 		28.8
(3)
A 		24.1
(1.8)
A 		23
C 15.3
(-3)
A 		37.5
(-1.2)
A 		14.8
(-3)
A 		89.9
(3)
A 		75
avr 13.2
(-3) 		29.8
(0.7) 		18.9
(-1.7) 		40.2
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 88
1 2 3 4 5 6 range
A 14
(-2.6)
A 		16.5
(-2.5)
A 		8.6
(-3)
A 		19.2
(-2.3)
A 		69.2
(1.1)
A 		96.6
(3)
A 		88
B 8.6
(-3)
A 		11.3
(-2.7)
A 		14.3
(-2.3)
A 		9.7
(-2.9)
A 		31.5
(-0.2)
A 		58.4
(3)
A 		50
C 19
(-2.5)
A 		12.7
(-3)
A 		12.3
(-3)
A 		21.7
(-2.3)
A 		37
(-1.2)
A 		95.3
(3)
A 		83
avr 13.9
(-2.8) 		13.5
(-2.8) 		11.7
(-3) 		16.9
(-2.6) 		45.9
(-0.1) 		83.4
(3) 		72
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 6.9
(1.3)
A 		9.2
(3)
A 		3.5
(-1.2)
A 		1
(-3)
A 		8
B 1.7
(-3)
A 		2.4
(-2.2)
A 		6.7
(3)
A 		5.1
(1.1)
A 		5
C 5.1
(-3)
A 		10.8
(0.4)
A 		5.1
(-3)
A 		15.2
(3)
A 		10
avr 4.6
(-3) 		7.5
(3) 		5.1
(-2) 		7.1
(2.2) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 2.6
(-2.8)
A 		5.9
(-1.9)
A 		1.9
(-3)
A 		4.9
(-2.2)
A 		20.9
(2.3)
A 		23.5
(3)
A 		22
B 3
(-2.9)
A 		3.8
(-2.6)
A 		3.5
(-2.7)
A 		2.6
(-3)
A 		12.8
(0.2)
A 		21.8
(3)
A 		19
C 7
(-2.2)
A 		3.9
(-2.8)
A 		3.1
(-3)
A 		4.4
(-2.7)
A 		12
(-1.1)
A 		31.9
(3)
A 		29
avr 4.2
(-2.6) 		4.5
(-2.6) 		2.8
(-3) 		4
(-2.7) 		15.2
(0.2) 		25.7
(3) 		23
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183372_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19458
Sequence Type Exemplar sequence
Representative Public ID Y39B6B.B NCBI
Target Description Y39B6B.B /REP_DB=WormBase Gene ID /WP=CE21671 /TR=Q9NEV7 /GB=CAB60907.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171592(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171592 NCBI Caenorhabditis elegans Y39B6A.16 (Y39B6A.16) mRNA, complete cds. 10/11 A 
SNAP00000030550 ENSEMBL cdna:SNAP chromosome:CEL140:V:19101078:19120977:-1 10/11 None
GENEFINDER00000030703 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19101735:19103681:-1 11/11 None
Y39B6A.16 ENSEMBL cdna:known chromosome:CEL140:V:19101729:19103681:-1 gene:Y39B6A.16 10/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19101734-19103681(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y39B6A.16
Entrez Gene 3565475 Entrez gene
SwissProt Q8MYP1 EMBL-EBI
WormBase CE29858 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T45027 hypothetical protein Y39B6B.a [imported] - Caenorhabditis elegans 0.0
blast CAD31812 Hypothetical protein Y39B6A.14 [Caenorhabditis elegans] ref|NP_741684.1| Y39B6A.14 [Caenorhabditis elegans] 0.0
blast CAE56026 Hypothetical protein CBG23585 [Caenorhabditis briggsae] 1.0E-166
blast CAD31814 Hypothetical protein Y39B6A.16 [Caenorhabditis elegans] ref|NP_741682.1| Y39B6A.16 [Caenorhabditis elegans] 1.0E-157
blast T45028 hypothetical protein Y39B6B.b [imported] - Caenorhabditis elegans 1.0E-131
blast CAD31814 Hypothetical protein Y39B6A.16 [Caenorhabditis elegans] ref|NP_741682.1| Y39B6A.16 [Caenorhabditis elegans] 1.0E-126
blast CAE57004 Hypothetical protein CBG24873 [Caenorhabditis briggsae] 2.0E-44
Protein Domains
Database ID Description E-Value
Pfam IPR007949 EMBL-EBI SDA1 2.7E-39
Sequence
Target Sequence 
>C. ELEGANS:183372_AT
gaatcgttaaaatgggccccgagctgccgatgacgataaaatcaatgttcaccccaattt
cggaggaaatcaatcagtatacacgtgatttgacacgtgttttaacattccaacaccgcc
aacgggcgagtttatcgacatttttggaacgaaaagtagcggcattcgatcgactacgtg
atgcttatagtgaagaaaaaaccaaaaaagaacactataaaaaacaactcgaagaggcgt
accacctgctcaaatcgaaagaacacgaaatttcgaaactaaaaaagcaactggccgagc
aggctccgccccctcagactccgccccgttcaaattctctgaaagtggcgagttcgcgga
gtctggagacaccgtcaatgatgcgtgtattcagtgattcaatgtatgagacgcccgttc
aaattcagagaagatttacgaaggcacaggcgaaggcagaggccgaggccgaggcgcctg
ccaaatcgccaggattcacgacac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATCGTTAAAATGGGCCCCGAGCT 59 1 176 Antisense
CCCCGAGCTGCCGATGACGATAAAA 380 261 192 Antisense
AAATCAATGTTCACCCCAATTTCGG 480 115 214 Antisense
TTCCAACACCGCCAACGGGCGAGTT 629 699 283 Antisense
AGCGGCATTCGATCGACTACGTGAT 652 81 333 Antisense
CAACTCGAAGAGGCGTACCACCTGC 509 187 400 Antisense
AAAAGCAACTGGCCGAGCAGGCTCC 599 131 458 Antisense
CGCCCCGTTCAAATTCTCTGAAAGT 323 257 497 Antisense
GTTCGCGGAGTCTGGAGACACCGTC 308 441 527 Antisense
GATTCAATGTATGAGACGCCCGTTC 85 431 571 Antisense
GCCAAATCGCCAGGATTCACGACAC 73 279 655 Antisense
Sequence Source Affymetrix Proprietary Database