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[183371_at]

Description F58E2.3 /REP_DB=WormBase Gene ID /WP=CE17131 /TR=Q9TYZ7 /GB=AAC68966.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 92      4grp_high_8_8 > 18      6grp_total > 84      4grp_total > 29      6grp_high1_sub > 04_05      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 89
1 2 3 4 range
A 88.2
(1.7)
P 		63.6
(-0.9)
A 		44.8
(-3)
A 		99.8
(3)
P 		55
B 126.6
(2.1)
P 		114.9
(0.6)
P 		87.6
(-3)
P 		133.6
(3)
P 		46
C 115.1
(3)
P 		76.6
(-1.4)
P 		62.4
(-3)
A 		93.6
(0.6)
P 		53
avr 110
(3) 		85
(-0.3) 		64.9
(-3) 		109
(2.9) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 187
1 2 3 4 5 6 range
A 139.3
(-2.2)
A 		115.2
(-3)
P 		122.8
(-2.7)
P 		286.1
(3)
P 		195.5
(-0.2)
P 		166.9
(-1.2)
P 		171
B 150.4
(-1.4)
P 		107
(-3)
P 		157.4
(-1.1)
P 		265.6
(3)
P 		217.3
(1.2)
P 		171.4
(-0.6)
P 		159
C 99.1
(-3)
P 		135.2
(-1.4)
P 		149
(-0.8)
P 		237.4
(3)
P 		232.6
(2.8)
P 		196.4
(1.2)
P 		138
avr 129.6
(-2.6) 		119.1
(-3) 		143.1
(-2) 		263
(3) 		215.1
(1) 		178.2
(-0.5) 		144
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 32.1
(3)
P 		13.8
(-2.4)
A 		11.7
(-3)
A 		14.6
(-2.1)
P 		20
B 40.4
(3)
P 		28.4
(-0.6)
P 		20.3
(-3)
P 		28.5
(-0.6)
P 		20
C 38.1
(3)
P 		22
(-1.3)
P 		21.8
(-1.4)
A 		15.8
(-3)
P 		22
avr 36.9
(3) 		21.4
(-1.9) 		17.9
(-3) 		19.6
(-2.5) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 25.7
(-3)
A 		41
(-1)
P 		26.7
(-2.9)
P 		72.6
(3)
P 		59
(1.3)
P 		40.6
(-1.1)
P 		47
B 52.3
(-1.1)
P 		35.6
(-3)
P 		38.2
(-2.7)
P 		70.3
(1)
P 		88.3
(3)
P 		63.9
(0.2)
P 		53
C 36.7
(-3)
P 		41.2
(-2.3)
P 		37.9
(-2.8)
P 		47.7
(-1.3)
P 		75.3
(3)
P 		65.7
(1.5)
P 		39
avr 38.2
(-2.4) 		39.3
(-2.2) 		34.3
(-3) 		63.5
(1.4) 		74.2
(3) 		56.7
(0.4) 		40
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183371_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10968
Sequence Type Exemplar sequence
Representative Public ID F58E2.3 NCBI
Target Description F58E2.3 /REP_DB=WormBase Gene ID /WP=CE17131 /TR=Q9TYZ7 /GB=AAC68966.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067952(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067952 NCBI Caenorhabditis elegans F58E2.3 (F58E2.3) mRNA, complete cds. 11/11 None
SNAP00000029897 ENSEMBL cdna:SNAP chromosome:CEL140:IV:3468384:3469776:1 11/11 None
GENEFINDER00000029900 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:3463932:3469776:1 11/11 None
F58E2.3 ENSEMBL cdna:known chromosome:CEL140:IV:3467427:3469825:1 gene:F58E2.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3467438-3469782(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F58E2.3
Entrez Gene 177110 Entrez gene
SwissProt Q9TYZ7 EMBL-EBI
WormBase CE17131 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC68966 Hypothetical protein F58E2.3 [Caenorhabditis elegans] ref|NP_500353.1| F58E2.3 [Caenorhabditis elegans] 0.0
blast AAC68967 Hypothetical protein F58E2.4 [Caenorhabditis elegans] ref|NP_500352.1| F58E2.4 [Caenorhabditis elegans] 0.0
blast AAC68967 Hypothetical protein F58E2.4 [Caenorhabditis elegans] ref|NP_500352.1| F58E2.4 [Caenorhabditis elegans] 1.0E-97
blast CAB16532 Hypothetical protein Y70C5A.2 [Caenorhabditis elegans] ref|NP_507204.1| Y70C5A.2 [Caenorhabditis elegans] 2.0E-50
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.5E-17
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 2.5E-20
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 5.5E-5
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 2.5E-20
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.1E-11
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.0E-26
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.5E-17
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 2.5E-20
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.0E-4
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 5.5E-5
Sequence
Target Sequence 
>C. ELEGANS:183371_AT
cttttcaggctagctgttgcacagttgttggacgttatttctacaactctacaacaactg
gacaaccaaattcctgtgaaaaaattgagcattcaagtattgaatcaagaaaccttaata
caactgctatcactattgaggccctcatcgctgaaaactatagagattagaaagctgaaa
aatgatatcatttccaaaaaatcgctgaaactaaatgaagctgcacagttggaccaatgg
aagaatgcagaagatattttgattgaggtgctgacagctcctggacaaattcaatatttt
ttgcatttcgtgaatacagagatcaatttgatggcaatttcaatgcgagatatatttgat
ttgaaacatacattcctccaatcaactacattcaagaaattcaaggcttctttcgataat
agtgatattgacgatcaaatctatgatgaacaatttttgggatttccctataaacgacct
gaaaatccatcgacaaatgaaccgagtgtttggtttttgagaatgtcggcttctactgat
gttcttcatattttatattatgaacaccgaaaatggattacattttcccgggtagcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTTTCAGGCTAGCTGTTGCACAGT 710 221 1450 Antisense
GCTGTTGCACAGTTGTTGGACGTTA 528 295 1462 Antisense
GGACGTTATTTCTACAACTCTACAA 376 523 1479 Antisense
AACTGGACAACCAAATTCCTGTGAA 376 143 1505 Antisense
AACTGCTATCACTATTGAGGCCCTC 642 141 1571 Antisense
AGGCCCTCATCGCTGAAAACTATAG 349 51 1588 Antisense
GAAGCTGCACAGTTGGACCAATGGA 469 343 1666 Antisense
GAGGTGCTGACAGCTCCTGGACAAA 289 403 1714 Antisense
ATACATTCCTCCAATCAACTACATT 142 25 1817 Antisense
AATGTCGGCTTCTACTGATGTTCTT 607 163 1971 Antisense
TGGATTACATTTTCCCGGGTAGCAA 401 551 2023 Antisense
Sequence Source Affymetrix Proprietary Database