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[183370_at]

Description C06E4.2 /REP_DB=WormBase Gene ID /WP=CE03950 /TR=Q17728 /GB=AAA82477.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 90      6grp_high1_10_10 > 09      4grp_highest_8_8 > 63      4grp_high_8_8 > 27      6grp_highest_nonorm > 70      6grp_total > 19      4grp_total > 36      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 236
1 2 3 4 range
A 332.5
(1)
P 		383.8
(3)
P 		229.3
(-3)
P 		319.2
(0.5)
P 		155
B 323.9
(3)
P 		284.8
(1.4)
P 		224.1
(-1)
P 		174.8
(-3)
P 		149
C 277.6
(-1)
P 		320.4
(0.3)
P 		210.7
(-3)
P 		410.9
(3)
P 		200
avr 311.3
(2) 		329.7
(3) 		221.4
(-3) 		301.6
(1.4) 		108

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 267
1 2 3 4 5 6 range
A 430.8
(3)
P 		269.2
(-1.2)
P 		291.1
(-0.6)
P 		286.2
(-0.8)
P 		425.5
(2.9)
P 		200
(-3)
P 		231
B 393.5
(3)
P 		259
(-0.7)
P 		252.4
(-0.9)
P 		308.2
(0.7)
P 		359.7
(2.1)
P 		175.3
(-3)
P 		218
C 309.8
(2.1)
P 		306.8
(2)
P 		239
(-0.4)
P 		316.4
(2.3)
P 		336.3
(3)
P 		163.5
(-3)
P 		173
avr 378
(3) 		278.3
(-0) 		260.8
(-0.5) 		303.6
(0.8) 		373.8
(2.9) 		179.6
(-3) 		198
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 121.1
(3)
P 		83.3
(-0)
P 		59.9
(-1.9)
P 		46.7
(-3)
P 		74
B 103.3
(3)
P 		70.3
(0)
P 		51.9
(-1.7)
P 		37.3
(-3)
P 		66
C 91.9
(2.9)
P 		92.1
(3)
P 		73.4
(-1.9)
P 		69.3
(-3)
P 		23
avr 105.4
(3) 		81.9
(0.4) 		61.7
(-1.8) 		51.1
(-3) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 97
1 2 3 4 5 6 range
A 79.4
(-0.7)
P 		95.7
(0.5)
P 		63.4
(-1.9)
P 		72.6
(-1.2)
P 		128.4
(3)
P 		48.7
(-3)
P 		80
B 136.9
(2.3)
P 		86.2
(-1.2)
P 		61.3
(-3)
P 		81.6
(-1.6)
P 		146.1
(3)
P 		65.4
(-2.7)
P 		85
C 114.8
(3)
P 		93.6
(0.9)
P 		60.8
(-2.4)
P 		63.6
(-2.1)
P 		108.8
(2.4)
P 		54.7
(-3)
P 		60
avr 110.4
(1.5) 		91.8
(-0) 		61.8
(-2.5) 		72.6
(-1.6) 		127.8
(3) 		56.3
(-3) 		72
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183370_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10007
Sequence Type Exemplar sequence
Representative Public ID C06E4.2 NCBI
Target Description C06E4.2 /REP_DB=WormBase Gene ID /WP=CE03950 /TR=Q17728 /GB=AAA82477.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068757(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068757 NCBI Caenorhabditis elegans C06E4.2 (C06E4.2) mRNA, complete cds. 11/11 None
SNAP00000041908 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7282276:7283070:1 11/11 None
GENEFINDER00000041914 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7282276:7283070:1 11/11 None
C06E4.2 ENSEMBL cdna:known chromosome:CEL140:IV:7282276:7283070:1 gene:C06E4.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7282281-7283076(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C06E4.2
Entrez Gene 182325 Entrez gene
SwissProt Q17728 EMBL-EBI
WormBase CE03950 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA82477 Hypothetical protein C06E4.2 [Caenorhabditis elegans] ref|NP_501158.1| C06E4.2 [Caenorhabditis elegans] 2.0E-32
blast CAE61850 Hypothetical protein CBG05826 [Caenorhabditis briggsae] 6.0E-24
Sequence
Target Sequence 
>C. ELEGANS:183370_AT
atgaatcccatgtcgtcgactttactgatttttctcatcacaatcctgttagcttcagtg
aaagcagattcagaagttacagagtcttccgacataaaacaatcatctgctcaagcggtt
gctccaacacaattccaaatcgcaacatccccacatccattctctcgtcaaattgctgct
ccatcgagaatccatcgtagatcaatcacaccagtacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGAATCCCATGTCGTCGACTTTAC 114 45 13 Antisense
GTCGTCGACTTTACTGATTTTTCTC 490 473 24 Antisense
TTCTCATCACAATCCTGTTAGCTTC 121 693 44 Antisense
CAGAAGTTACAGAGTCTTCCGACAT 214 205 83 Antisense
GAGTCTTCCGACATAAAACAATCAT 87 401 94 Antisense
CAATCATCTGCTCAAGCGGTTGCTC 441 181 112 Antisense
TTGCTCCAACACAATTCCAAATCGC 458 701 131 Antisense
ACACAATTCCAAATCGCAACATCCC 562 111 139 Antisense
CGTCAAATTGCTGCTCCATCGAGAA 201 247 178 Antisense
GCTCCATCGAGAATCCATCGTAGAT 234 299 190 Antisense
ATCGTAGATCAATCACACCAGTACC 146 35 206 Antisense
Sequence Source Affymetrix Proprietary Database