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[183369_at]

Description W06D12.6 /REP_DB=WormBase Gene ID /WP=CE16554 /TR=O45895 /GB=CAB04927.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 03      4grp_total > 26      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 6
(-3)
A 		34.4
(3)
A 		6
(-3)
A 		8.7
(-2.4)
A 		28
B 3.1
(-3)
A 		44.2
(3)
A 		35.8
(1.8)
A 		41.4
(2.6)
A 		41
C 28.1
(-0)
A 		3.5
(-3)
A 		5.1
(-2.8)
A 		53
(3)
A 		50
avr 12.4
(-3) 		27.4
(1.1) 		15.6
(-2.1) 		34.4
(3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 9.6
(2.5)
A 		7.6
(1)
A 		2.2
(-3)
A 		7.5
(0.9)
A 		10.3
(3)
A 		6
(-0.2)
A 		8
B 15.4
(-0.1)
A 		10.4
(-1.4)
A 		20.8
(1.3)
A 		27.5
(3)
A 		4
(-3)
A 		5.1
(-2.7)
A 		24
C 16.2
(-0.5)
A 		32.9
(2.3)
A 		5.6
(-2.3)
A 		36.8
(3)
A 		6.2
(-2.2)
A 		1.2
(-3)
A 		36
avr 13.7
(-0.1) 		17
(0.9) 		9.5
(-1.4) 		23.9
(3) 		6.8
(-2.2) 		4.1
(-3) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 2.2
(-2.1)
A 		7.5
(3)
A 		1.6
(-2.7)
A 		1.3
(-3)
A 		6
B 1
(-3)
A 		10.9
(3)
A 		8.3
(1.4)
A 		8.8
(1.7)
A 		10
C 9.3
(3)
A 		1
(-3)
A 		1.8
(-2.4)
A 		8.9
(2.7)
A 		8
avr 4.2
(-2.3) 		6.5
(3) 		3.9
(-3) 		6.3
(2.5) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 1.8
(0)
A 		2.7
(2.1)
A 		0.5
(-3)
A 		1.9
(0.2)
A 		3.1
(3)
A 		1.5
(-0.7)
A 		3
B 5.4
(1)
A 		3.5
(-1)
A 		5
(0.6)
A 		7.3
(3)
A 		1.6
(-3)
A 		1.9
(-2.7)
A 		6
C 6
(0.5)
A 		10
(3)
A 		1.4
(-2.4)
A 		7.4
(1.4)
A 		2
(-2)
A 		0.4
(-3)
A 		10
avr 4.4
(1.4) 		5.4
(2.9) 		2.3
(-1.6) 		5.5
(3) 		2.2
(-1.7) 		1.3
(-3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183369_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13300
Sequence Type Exemplar sequence
Representative Public ID W06D12.6 NCBI
Target Description W06D12.6 /REP_DB=WormBase Gene ID /WP=CE16554 /TR=O45895 /GB=CAB04927.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075077(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075077 NCBI Caenorhabditis elegans W06D12.6 (W06D12.6) mRNA, complete cds. 10/11 None
GENEFINDER00000010718 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17707927:17711127:1 10/11 None
W06D12.6 ENSEMBL cdna:known chromosome:CEL140:V:17708690:17709451:1 gene:W06D12.6 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000010705 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17708689-17709451(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W06D12.6
Entrez Gene 189248 Entrez gene
SwissProt O45895 EMBL-EBI
WormBase CE36615 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04927 Hypothetical protein W06D12.6 [Caenorhabditis elegans] ref|NP_507478.2| W06D12.6 [Caenorhabditis elegans] 1.0E-125
blast CAB04927 Hypothetical protein W06D12.6 [Caenorhabditis elegans] ref|NP_507478.2| W06D12.6 [Caenorhabditis elegans] 1.0E-112
blast CAB04210 Hypothetical protein F28B1.3 [Caenorhabditis elegans] ref|NP_507318.1| F28B1.3 [Caenorhabditis elegans] 7.0E-32
blast CAB04211 Hypothetical protein F28B1.4 [Caenorhabditis elegans] ref|NP_507319.1| F28B1.4 [Caenorhabditis elegans] 5.0E-25
blast CAB04210 Hypothetical protein F28B1.3 [Caenorhabditis elegans] ref|NP_507318.1| F28B1.3 [Caenorhabditis elegans] 7.0E-17
blast CAB04211 Hypothetical protein F28B1.4 [Caenorhabditis elegans] ref|NP_507319.1| F28B1.4 [Caenorhabditis elegans] 8.0E-16
Sequence
Target Sequence 
>C. ELEGANS:183369_AT
gaagtttactcctaacagtccagaaaacttcacagagatgcgagttgtagttgagacgat
tcctggtgtttctaatctggccgattatcttagtttgggccctgatactttcacgatggc
aggggtggtctgtgccaaaggccaatggcatctgaacggatttgccttatttgtggaacc
aaaattttccagtataacacgtcactgtaattgtgatccagtttcgcaagtatttacgta
ccaatttcatagtcctacaaatcaacacttcacacgggcaattgacagagaagacgtgta
tataaatcgtacgatcgagggtggtacgaggaaaaatattgtagagtcttgcgaatttac
ttacacttgtgcgggtgacggcgatctcgtggttttcagctgggaaaacggtccaatacc
cgtaaggttcccaggtcagactattaccgccaaatgccggaggccaccagtctctcacag
tgatgtca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGTTTACTCCTAACAGTCCAGAA 78 337 45 Antisense
TTCCTGGTGTTTCTAATCTGGCCGA 297 697 104 Antisense
CCGATTATCTTAGTTTGGGCCCTGA 72 227 125 Antisense
GGGCCCTGATACTTTCACGATGGCA 678 491 141 Antisense
GGGTGGTCTGTGCCAAAGGCCAATG 540 497 167 Antisense
CAAATCAACACTTCACACGGGCAAT 685 193 302 Antisense
TACACTTGTGCGGGTGACGGCGATC 377 637 406 Antisense
TGACGGCGATCTCGTGGTTTTCAGC 449 569 420 Antisense
GTTCCCAGGTCAGACTATTACCGCC 227 441 471 Antisense
TATTACCGCCAAATGCCGGAGGCCA 182 659 486 Antisense
CCACCAGTCTCTCACAGTGATGTCA 474 273 508 Antisense
Sequence Source Affymetrix Proprietary Database