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[183368_at]

Description C03H5.3 /REP_DB=WormBase Gene ID /WP=CE07896 /TR=O16657 /GB=AAB66130.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 88      6grp_high1_10_10 > 88      4grp_highest_8_8 > 15      4grp_high_8_8 > 06      6grp_highest_nonorm > 91      6grp_total > 88      4grp_total > 02      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 539
1 2 3 4 range
A 222.3
(-3)
P 		328.3
(-1.3)
P 		260.9
(-2.4)
P 		590.8
(3)
P 		369
B 280.6
(-2.2)
P 		211
(-3)
P 		242.1
(-2.7)
P 		750.3
(3)
P 		539
C 286.7
(-3)
P 		294.3
(-2.8)
P 		301.6
(-2.7)
P 		570.8
(3)
P 		284
avr 263.2
(-3) 		277.9
(-2.8) 		268.2
(-2.9) 		637.3
(3) 		374

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 309
1 2 3 4 5 6 range
A 156.5
(-3)
P 		261
(-0.7)
P 		209.1
(-1.8)
P 		254.4
(-0.8)
P 		213.2
(-1.7)
P 		427.9
(3)
P 		271
B 221.9
(-0.6)
P 		152.9
(-2.6)
P 		165.3
(-2.3)
P 		139.1
(-3)
P 		275.8
(0.9)
P 		349.8
(3)
P 		211
C 274.3
(0.6)
P 		119.4
(-3)
P 		255.6
(0.2)
P 		190.6
(-1.3)
P 		375.6
(3)
P 		334.3
(2)
P 		256
avr 217.6
(-1.8) 		177.8
(-3) 		210
(-2) 		194.7
(-2.5) 		288.2
(0.4) 		370.7
(3) 		193
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 108
1 2 3 4 range
A 81
(1.2)
P 		71.3
(-2)
P 		68.2
(-3)
P 		86.5
(3)
P 		18
B 89.5
(-0.9)
P 		52.1
(-3)
P 		56.1
(-2.8)
P 		159.9
(3)
P 		108
C 94.9
(0)
P 		84.6
(-3)
P 		105.1
(3)
P 		96.3
(0.4)
P 		21
avr 88.5
(-0.4) 		69.3
(-3) 		76.5
(-2) 		114.2
(3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 102
1 2 3 4 5 6 range
A 28.9
(-3)
P 		92.8
(2.1)
P 		45.5
(-1.7)
P 		64.5
(-0.2)
P 		64.3
(-0.2)
P 		104.2
(3)
P 		75
B 77.2
(-0.4)
P 		50.9
(-2.1)
P 		40.1
(-2.8)
P 		36.8
(-3)
P 		112.1
(1.8)
P 		130.4
(3)
P 		94
C 101.7
(1.6)
P 		36.4
(-3)
P 		65.1
(-1)
P 		38.3
(-2.9)
P 		121.5
(3)
P 		111.9
(2.3)
P 		85
avr 69.3
(-1) 		60
(-1.8) 		50.2
(-2.7) 		46.5
(-3) 		99.3
(1.6) 		115.5
(3) 		69
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183368_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4182
Sequence Type Exemplar sequence
Representative Public ID C03H5.3 NCBI
Target Description C03H5.3 /REP_DB=WormBase Gene ID /WP=CE07896 /TR=O16657 /GB=AAB66130.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061321(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061321 NCBI Caenorhabditis elegans C03H5.3 (C03H5.3) mRNA, complete cds. 11/11 A 
SNAP00000020967 ENSEMBL cdna:SNAP chromosome:CEL140:II:386238:392537:1 11/11 None
GENEFINDER00000020975 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:385757:387820:1 11/11 None
C03H5.3 ENSEMBL cdna:known chromosome:CEL140:II:386200:387846:1 gene:C03H5.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:386291-387820(+) 99.65 99.65
Public Domain and Genome References
Gene Title
Ensembl C03H5.3
Entrez Gene 173427 Entrez gene
SwissProt O16657 EMBL-EBI
WormBase CE07896 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB66127 Hypothetical protein C03H5.2 [Caenorhabditis elegans] ref|NP_493723.3| C03H5.2 [Caenorhabditis elegans] 1.0E-180
blast CAE62791 Hypothetical protein CBG06965 [Caenorhabditis briggsae] 1.0E-164
blast AAB66130 Hypothetical protein C03H5.3 [Caenorhabditis elegans] ref|NP_493722.1| C03H5.3 [Caenorhabditis elegans] 1.0E-106
blast AAB66130 Hypothetical protein C03H5.3 [Caenorhabditis elegans] ref|NP_493722.1| C03H5.3 [Caenorhabditis elegans] 1.0E-105
blast AAB66130 Hypothetical protein C03H5.3 [Caenorhabditis elegans] ref|NP_493722.1| C03H5.3 [Caenorhabditis elegans] 1.0E-104
blast CAE62790 Hypothetical protein CBG06964 [Caenorhabditis briggsae] 4.0E-29
blast CAE62790 Hypothetical protein CBG06964 [Caenorhabditis briggsae] 7.0E-29
Protein Domains
Database ID Description E-Value
Pfam IPR007271 EMBL-EBI Nucleotide-sugar transporter 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000020967 8 297-319,329-351,434-453,473-492,505-527,542-561,568-587,591-613
Sequence
Target Sequence 
>C. ELEGANS:183368_AT
ggcgccatcgcaagaaaactcagttgatgatgatgcggaatccacacaactttcggtaga
tgtattcgcagatccgtcagatttcgaggatgatgacgacgaggttgttccggagaccga
ttacgaagacaacaacgaggagccaaaaaatgatcaaaatcctgtggaaatcccagataa
ttccgattccgatgacgatgagccaatggaaatttcttccaaaaatccggttacttcaat
tgaaaatccagaaaattccgattccgacgatgatgagccaatggaagccacttcaaaagc
tccagagatgtcagtcgctgagccaaaaagtataattgagaagcttctggagaaaaaggc
cgaaaaatcggcgaaattggcggccaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCGCCATCGCAAGAAAACTCAGTT 199 543 249 Antisense
TGCGGAATCCACACAACTTTCGGTA 124 565 282 Antisense
GGTAGATGTATTCGCAGATCCGTCA 272 505 303 Antisense
TTCGCAGATCCGTCAGATTTCGAGG 464 697 313 Antisense
ATGACGACGAGGTTGTTCCGGAGAC 117 45 341 Antisense
TCCGGAGACCGATTACGAAGACAAC 6 595 357 Antisense
ATCCCAGATAATTCCGATTCCGATG 117 39 418 Antisense
AAAATTCCGATTCCGACGATGATGA 490 129 500 Antisense
GGAAGCCACTTCAAAAGCTCCAGAG 224 531 531 Antisense
AGCTCCAGAGATGTCAGTCGCTGAG 322 81 546 Antisense
AAAATCGGCGAAATTGGCGGCCAAG 495 127 612 Antisense
Sequence Source Affymetrix Proprietary Database