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[183367_at]

Description M02D8.5 /REP_DB=WormBase Gene ID /WP=CE04761 /TR=Q21464 /GB=AAA82382.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 77      6grp_high1_10_10 > 86      4grp_high_8_8 > 37      6grp_highest_nonorm > 92      6grp_total > 76      4grp_total > 34      6grp_highest_sub > Da      6grp_high1_sub > In      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 81
1 2 3 4 range
A 127.7
(-0.5)
P 		122.6
(-3)
M 		134.7
(3)
P 		126.6
(-1)
P 		12
B 127.1
(-0.4)
P 		149.2
(3)
P 		146.1
(2.5)
P 		109.9
(-3)
P 		39
C 148.7
(-1.8)
P 		174.7
(1.2)
P 		138
(-3)
P 		190.4
(3)
P 		52
avr 134.5
(-3) 		148.8
(3) 		139.6
(-0.9) 		142.3
(0.3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 536
1 2 3 4 5 6 range
A 208.4
(-2.3)
P 		153.4
(-3)
P 		254.3
(-1.7)
P 		278.3
(-1.4)
P 		239.1
(-1.9)
P 		624.6
(3)
P 		471
B 159.4
(-2.4)
P 		124.7
(-3)
P 		171.3
(-2.2)
P 		253.4
(-0.7)
P 		211.3
(-1.4)
P 		456.9
(3)
P 		332
C 96.5
(-3)
P 		148
(-2.4)
P 		184.4
(-2)
P 		280.3
(-0.9)
P 		205.7
(-1.8)
P 		632
(3)
P 		536
avr 154.8
(-2.8) 		142
(-3) 		203.3
(-2.1) 		270.7
(-1.2) 		218.7
(-1.9) 		571.2
(3) 		429
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 46.5
(3)
P 		26.6
(-1.3)
M 		35.2
(0.6)
P 		18.5
(-3)
P 		28
B 40.5
(3)
P 		36.9
(1.7)
P 		33.9
(0.7)
P 		23.4
(-3)
P 		17
C 49.2
(2.7)
P 		50.2
(3)
P 		48.1
(2.3)
P 		32.1
(-3)
P 		18
avr 45.4
(3) 		37.9
(0.8) 		39.1
(1.2) 		24.7
(-3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 176
1 2 3 4 5 6 range
A 38.4
(-3)
P 		54.6
(-2.1)
P 		55.4
(-2.1)
P 		70.6
(-1.3)
P 		72.1
(-1.2)
P 		152.1
(3)
P 		114
B 55.5
(-2.3)
P 		41.5
(-3)
P 		41.6
(-3)
P 		67.1
(-1.8)
P 		85.9
(-0.9)
P 		170.4
(3)
P 		129
C 35.8
(-3)
P 		45.2
(-2.7)
P 		46.9
(-2.6)
P 		56.4
(-2.3)
P 		66.6
(-1.9)
P 		211.6
(3)
P 		176
avr 43.2
(-3) 		47.1
(-2.8) 		48
(-2.8) 		64.7
(-2) 		74.9
(-1.6) 		178
(3) 		135
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183367_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16788
Sequence Type Exemplar sequence
Representative Public ID M02D8.5 NCBI
Target Description M02D8.5 /REP_DB=WormBase Gene ID /WP=CE04761 /TR=Q21464 /GB=AAA82382.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077083(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077083 NCBI Caenorhabditis elegans M02D8.5 (M02D8.5) mRNA, complete cds. 11/11 None
GENEFINDER00000039687 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:8754627:8761490:-1 11/11 None
M02D8.5 ENSEMBL cdna:known chromosome:CEL140:X:8754627:8760539:-1 gene:M02D8.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8754625-8760538(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl M02D8.5
Entrez Gene 181122 Entrez gene
SwissProt Q21464 EMBL-EBI
WormBase CE04761 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_509484 M02D8.5 [Caenorhabditis elegans] gb|AAA82382.1| Hypothetical protein M02D8.5 [Caenorhabditis elegans] 0.0
blast CAE69353 Hypothetical protein CBG15442 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:183367_AT
tgcattttcaaaacccatttcctcaaaaatattttatgggctcacaacctcttcagacga
ttgcatagcgcataattcaagtgagcctatcgctcaggatctgtttaaaaactatttagt
attgcaatattcaacaactgatatcagctcagtgtcatattcatgggctatttcgagtgg
aatcattgctcgtactatgcaacccggtgaaacagtagtattggtttctgacgactacag
aaaatataacgcttctcccttagatcaacagttctcagtgcaactggaaggtgaatcaaa
tgttcaaacaggattgatgtgtgaatttttggccgattctggaagcggcgctggcacttt
gtcctggtcctcttacgatgacatcaagcaaaagacaagttattcaaatgccaaaaaatc
ccttaaatacgcgtcttgtgggaacaaattacttgttgactacacttctcctgatggtgg
accagacaacggactatatctgaagattactcgagctgatcttcgatgttctcgaagtcc
aatgcgtttgtctatttcggttatcgttcttctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCATTTTCAAAACCCATTTCCTCA 501 577 1419 Antisense
TATTTTATGGGCTCACAACCTCTTC 353 663 1448 Antisense
GAGCCTATCGCTCAGGATCTGTTTA 428 383 1501 Antisense
CTCGTACTATGCAACCCGGTGAAAC 515 231 1607 Antisense
CGCTTCTCCCTTAGATCAACAGTTC 392 255 1668 Antisense
GGCCGATTCTGGAAGCGGCGCTGGC 454 539 1749 Antisense
AAATCCCTTAAATACGCGTCTTGTG 92 1 1834 Antisense
GACTACACTTCTCCTGATGGTGGAC 566 373 1876 Antisense
ACTCGAGCTGATCTTCGATGTTCTC 439 99 1927 Antisense
AGTCCAATGCGTTTGTCTATTTCGG 11 61 1954 Antisense
GTCTATTTCGGTTATCGTTCTTCTC 600 469 1968 Antisense
Sequence Source Affymetrix Proprietary Database