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[183366_at]

Description Y39B6A.E /REP_DB=WormBase Gene ID /WP=CE21665 /TR=Q9NEI7 /GB=CAB61062.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 01      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 180
1 2 3 4 range
A 13.4
(-3)
A 		16.5
(-2.9)
A 		53.3
(-1.5)
A 		178.4
(3)
A 		165
B 7.6
(-3)
A 		11
(-2.8)
A 		39.8
(-1.1)
A 		107.1
(3)
A 		100
C 33.9
(-2.2)
A 		11.8
(-3)
A 		10.6
(-3)
A 		187.6
(3)
A 		177
avr 18.3
(-2.8) 		13.1
(-3) 		34.6
(-2.1) 		157.7
(3) 		145

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 151
1 2 3 4 5 6 range
A 6.9
(-3)
A 		23.9
(-1.9)
A 		35.1
(-1.1)
A 		72.7
(1.4)
A 		49.9
(-0.1)
A 		95.9
(3)
A 		89
B 3.2
(-3)
A 		36.5
(-1.3)
A 		6.7
(-2.8)
A 		29.7
(-1.7)
A 		111.1
(2.4)
A 		122
(3)
M 		119
C 4.6
(-3)
A 		51.6
(-1.1)
A 		59.5
(-0.8)
A 		15.3
(-2.6)
A 		59.4
(-0.8)
A 		154.4
(3)
P 		150
avr 4.9
(-3) 		37.3
(-1.4) 		33.8
(-1.5) 		39.2
(-1.3) 		73.5
(0.5) 		124.1
(3) 		119
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 4.9
(-2.7)
A 		3.6
(-3)
A 		13.9
(-0.3)
A 		26.1
(3)
A 		23
B 2.4
(-3)
A 		2.7
(-2.9)
A 		9.2
(-1)
A 		22.8
(3)
A 		20
C 11.2
(-1.3)
A 		3.4
(-3)
A 		3.7
(-2.9)
A 		31.6
(3)
A 		28
avr 6.2
(-2.2) 		3.2
(-3) 		8.9
(-1.6) 		26.8
(3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 1.3
(-3)
A 		8.5
(-1)
A 		7.7
(-1.3)
A 		18.4
(1.6)
A 		15.1
(0.7)
A 		23.4
(3)
A 		22
B 1.1
(-3)
A 		12.1
(-1.5)
A 		1.6
(-2.9)
A 		7.9
(-2.1)
A 		45.1
(2.9)
A 		45.5
(3)
M 		44
C 1.7
(-3)
A 		15.7
(-1.3)
A 		15.1
(-1.4)
A 		3.1
(-2.8)
A 		19.2
(-0.9)
A 		51.7
(3)
P 		50
avr 1.4
(-3) 		12.1
(-1.3) 		8.1
(-2) 		9.8
(-1.7) 		26.5
(0.9) 		40.2
(3) 		39
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183366_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19431
Sequence Type Exemplar sequence
Representative Public ID Y39B6A.E NCBI
Target Description Y39B6A.E /REP_DB=WormBase Gene ID /WP=CE21665 /TR=Q9NEI7 /GB=CAB61062.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171567(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171567 NCBI Caenorhabditis elegans Y39B6A.40 (Y39B6A.40) mRNA, complete cds. 9/11 None
GENEFINDER00000030696 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18981955:18983713:-1 11/11 None
Y39B6A.40 ENSEMBL cdna:known chromosome:CEL140:V:18981955:18983713:-1 gene:Y39B6A.40 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000030527 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18981954-18983713(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y39B6A.40
Entrez Gene 189734 Entrez gene
SwissProt Q8MYM5 EMBL-EBI
WormBase CE34115 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD31831 Hypothetical protein Y39B6A.40 [Caenorhabditis elegans] ref|NP_741657.2| Y39B6A.40 [Caenorhabditis elegans] 1.0E-107
blast CAD31831 Hypothetical protein Y39B6A.40 [Caenorhabditis elegans] ref|NP_741657.2| Y39B6A.40 [Caenorhabditis elegans] 1.0E-104
blast CAE56189 Hypothetical protein CBG23812 [Caenorhabditis briggsae] 9.0E-23
blast CAE56189 Hypothetical protein CBG23812 [Caenorhabditis briggsae] 1.0E-19
Protein Domains
Database ID Description E-Value
Pfam IPR007527 EMBL-EBI SWIM Zn-finger 2.7E-5
Pfam IPR007527 EMBL-EBI SWIM Zn-finger 2.7E-5
Sequence
Target Sequence 
>C. ELEGANS:183366_AT
aaaaaagacacttctcgctgtaatttccgaatccagcagctcagatgactacttagaagc
cctggccgagatcgaaggactcgtaaaacacgaggcagcagccacagttcgcaaaacccc
gattttcagccaaaaaacttcaaagtttcagagtttccagctaatggaacgtggaaaagt
acgagaattggcagttccaaagccagaattctataataaacgtcgaaaatttgaagattt
ccaggagaaaacagttttcgactggaaaagcgagtttaacctgaaaaatgcgaagaaagt
cgagagatggacggtggaagagaaggaaaaacgggagaaacagcgatgttttattgaagt
agaacactacaaaaagaaggaatacctcaattttctgtaccctggcgtccattattgcac
ctgcccatatttccagtcaaccgtgcttcaaaagcaaactaattggatttgtgttcacat
tttggcatactattt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAAAAGACACTTCTCGCTGTAATT 18 129 33 Antisense
AATTTCCGAATCCAGCAGCTCAGAT 230 175 54 Antisense
AGATGACTACTTAGAAGCCCTGGCC 532 67 75 Antisense
AGCCCTGGCCGAGATCGAAGGACTC 4 83 90 Antisense
AACACGAGGCAGCAGCCACAGTTCG 45 135 119 Antisense
AAGTTTCAGAGTTTCCAGCTAATGG 341 157 175 Antisense
GGCAGTTCCAAAGCCAGAATTCTAT 694 533 222 Antisense
GAATACCTCAATTTTCTGTACCCTG 453 325 412 Antisense
TCCATTATTGCACCTGCCCATATTT 416 591 440 Antisense
TTCCAGTCAACCGTGCTTCAAAAGC 71 699 463 Antisense
GTGTTCACATTTTGGCATACTATTT 306 485 503 Antisense
Sequence Source Affymetrix Proprietary Database