[Home] | [Total List]

[183364_at]

Description Y39B6B.S /REP_DB=WormBase Gene ID /WP=CE21694 /TR=Q9NEU1 /GB=CAB60924.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 78      6grp_high1_10_10 > 96      4grp_highest_8_8 > 08      4grp_high_8_8 > 44      6grp_highest_nonorm > 94      6grp_total > 88      4grp_total > 51      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 256
1 2 3 4 range
A 426.4
(3)
P 		403.5
(2.2)
P 		415.6
(2.6)
P 		253
(-3)
P 		173
B 416.5
(-3)
P 		500.1
(3)
P 		421.9
(-2.6)
P 		482.2
(1.7)
P 		84
C 435.8
(1.1)
P 		509.4
(3)
P 		433
(1)
P 		276.6
(-3)
P 		233
avr 426.2
(1) 		471
(3) 		423.5
(0.9) 		337.3
(-3) 		134

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 482
1 2 3 4 5 6 range
A 366.7
(-3)
P 		405.9
(-2.1)
P 		449
(-1.2)
P 		377.5
(-2.8)
P 		565.3
(1.3)
P 		641.1
(3)
P 		274
B 383
(-3)
P 		426.8
(-2.2)
P 		510.9
(-0.7)
P 		405.4
(-2.6)
P 		666.9
(2.2)
P 		711.7
(3)
P 		329
C 353.9
(-3)
P 		397.1
(-2.5)
P 		404.2
(-2.4)
P 		536.3
(-0.7)
P 		449.6
(-1.8)
P 		836.1
(3)
P 		482
avr 367.9
(-3) 		409.9
(-2.3) 		454.7
(-1.6) 		439.7
(-1.8) 		560.6
(0.2) 		729.6
(3) 		362
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 118
1 2 3 4 range
A 155.3
(3)
P 		87.6
(-0.4)
P 		108.7
(0.6)
P 		37
(-3)
P 		118
B 132.8
(3)
P 		123.5
(1.4)
P 		97.8
(-3)
P 		102.8
(-2.1)
P 		35
C 144.3
(2.6)
P 		146.5
(2.7)
P 		150.9
(3)
P 		46.6
(-3)
P 		104
avr 144.1
(3) 		119.2
(1.2) 		119.1
(1.2) 		62.1
(-3) 		82

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 212
1 2 3 4 5 6 range
A 67.6
(-3)
P 		144.4
(1.5)
P 		97.8
(-1.2)
P 		95.8
(-1.4)
P 		170.6
(3)
P 		156.1
(2.2)
P 		103
B 133.3
(-2.1)
P 		142.1
(-1.7)
P 		124.1
(-2.4)
P 		107.4
(-3)
P 		271
(3)
P 		265.4
(2.8)
P 		164
C 131.2
(-2)
P 		121.2
(-2.4)
P 		102.9
(-3)
P 		107.8
(-2.8)
P 		145.5
(-1.6)
P 		279.9
(3)
P 		177
avr 110.7
(-2.7) 		135.9
(-1.5) 		108.3
(-2.8) 		103.7
(-3) 		195.7
(1.2) 		233.8
(3) 		130
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183364_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19456
Sequence Type Exemplar sequence
Representative Public ID Y39B6B.S NCBI
Target Description Y39B6B.S /REP_DB=WormBase Gene ID /WP=CE21694 /TR=Q9NEU1 /GB=CAB60924.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171595(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171595 NCBI Caenorhabditis elegans Y39B6A.13 (Y39B6A.13) mRNA, complete cds. 11/11 None
GENEFINDER00000030688 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19121116:19121933:-1 11/11 None
Y39B6A.13 ENSEMBL cdna:known chromosome:CEL140:V:19121116:19121933:-1 gene:Y39B6A.13 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19121115-19121933(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y39B6A.13
Entrez Gene 189731 Entrez gene
SwissProt Q9NEU1 EMBL-EBI
WormBase CE21694 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
9401 phosphoenolpyruvate-dependent sugar phosphotransferase system inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5351 sugar porter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAC51063 Hypothetical protein Y39B6A.13 [Caenorhabditis elegans] ref|NP_741685.1| Y39B6A.13 [Caenorhabditis elegans] 1.0E-115
blast CAE56025 Hypothetical protein CBG23584 [Caenorhabditis briggsae] 9.0E-33
Sequence
Target Sequence 
>C. ELEGANS:183364_AT
tatcgctcatggcacaaaatatcccaggaaattcgaagcggcgatgaaaaagagcgcgtt
ttccggttgattgtgaagatttcgatgcaaaaacttgatacatatgaagctggcaaggag
gtaaatcgtgaaaatccgcaaatttcggcgcaatttcccgattttctcttcaaatttctc
cacgctttccaatttctgccgtcagatcagcaaacctttgcgaattccatgttcttgctg
aaaataatcgatttattcggttcggaatgcccgaaaattataaatttctctgaaatttca
tatatttcgaggcttctcgagcttgccactaacgtattattaaaggatttattcgaaaac
tcggtgaatttatacccaaaagacgggaaattcaggaaaatcggcgcccgggacctgctc
gacggagttgtgatgtcagaagagccggaagatgggaaatataaagaaaaatcgttttta
aagatgaaaacgaagctaatggagctcgagccacgtggaaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATCGCTCATGGCACAAAATATCCC 699 657 70 Antisense
GCGCGTTTTCCGGTTGATTGTGAAG 445 285 123 Antisense
CAAATTTCGGCGCAATTTCCCGATT 88 189 208 Antisense
CTTTCCAATTTCTGCCGTCAGATCA 506 223 254 Antisense
GCCGTCAGATCAGCAAACCTTTGCG 565 283 267 Antisense
ACCTTTGCGAATTCCATGTTCTTGC 548 87 283 Antisense
CGATTTATTCGGTTCGGAATGCCCG 634 245 318 Antisense
TTCTCGAGCTTGCCACTAACGTATT 372 691 383 Antisense
GGAAATTCAGGAAAATCGGCGCCCG 404 525 455 Antisense
GGACCTGCTCGACGGAGTTGTGATG 595 523 480 Antisense
AATGGAGCTCGAGCCACGTGGAAAT 701 161 567 Antisense
Sequence Source Affymetrix Proprietary Database