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[183363_at]

Description ZC513.1 /REP_DB=WormBase Gene ID /WP=CE07608 /TR=Q23366 /GB=AAC48263.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 82      4grp_total > 57      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 216
1 2 3 4 range
A 62.6
(-3)
A 		155.1
(0.1)
P 		241.9
(3)
P 		71.3
(-2.7)
A 		179
B 94.6
(-1.6)
A 		210.7
(1.6)
P 		260.1
(3)
P 		44.1
(-3)
A 		216
C 63.6
(-3)
A 		257.8
(3)
P 		228.9
(2.1)
P 		62.7
(-3)
A 		195
avr 73.6
(-2.5) 		207.9
(1.8) 		243.6
(3) 		59.4
(-3) 		184

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 154
1 2 3 4 5 6 range
A 99.7
(-1.8)
A 		163
(1.7)
P 		168.3
(2)
P 		129.3
(-0.2)
P 		185.2
(3)
P 		78.9
(-3)
A 		106
B 74
(-3)
A 		156.6
(0.5)
P 		138.3
(-0.3)
P 		107.9
(-1.6)
P 		215.8
(3)
P 		91.6
(-2.3)
A 		142
C 80
(-2.2)
A 		189.1
(2.7)
P 		150.1
(0.9)
P 		196.7
(3)
P 		163.4
(1.5)
P 		61.9
(-3)
A 		135
avr 84.6
(-2.6) 		169.6
(2) 		152.2
(1.1) 		144.6
(0.6) 		188.1
(3) 		77.5
(-3) 		111
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 22.8
(-1.6)
A 		33.7
(-0.4)
P 		63.2
(3)
P 		10.4
(-3)
A 		53
B 30.2
(-0.5)
A 		52
(2)
P 		60.3
(3)
P 		9.4
(-3)
A 		51
C 21
(-2.1)
A 		74.1
(2.5)
P 		79.8
(3)
P 		10.6
(-3)
A 		69
avr 24.7
(-1.5) 		53.3
(1.5) 		67.8
(3) 		10.1
(-3) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 18.4
(-3)
A 		58
(3)
P 		36.6
(-0.2)
P 		32.8
(-0.8)
P 		55.9
(2.7)
P 		19.2
(-2.9)
A 		40
B 25.8
(-3)
A 		52.1
(-0.5)
P 		33.6
(-2.2)
P 		28.6
(-2.7)
P 		87.7
(3)
P 		34.2
(-2.2)
A 		62
C 29.6
(-1.6)
A 		57.7
(3)
P 		38.2
(-0.2)
P 		39.5
(0)
P 		52.9
(2.2)
P 		20.7
(-3)
A 		37
avr 24.6
(-3) 		55.9
(1.6) 		36.1
(-1.3) 		33.6
(-1.7) 		65.5
(3) 		24.7
(-3) 		41
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183363_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11696
Sequence Type Exemplar sequence
Representative Public ID ZC513.1 NCBI
Target Description ZC513.1 /REP_DB=WormBase Gene ID /WP=CE07608 /TR=Q23366 /GB=AAC48263.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072675(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072675 NCBI Caenorhabditis elegans ZC513.1 (ZC513.1) mRNA, complete cds. 11/11 None
SNAP00000025315 ENSEMBL cdna:SNAP chromosome:CEL140:V:8059017:8060144:1 11/11 None
GENEFINDER00000025321 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8057212:8060144:1 11/11 None
ZC513.1 ENSEMBL cdna:known chromosome:CEL140:V:8059017:8060144:1 gene:ZC513.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8059017-8060145(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZC513.1
Entrez Gene 191193 Entrez gene
SwissProt Q23366 EMBL-EBI
WormBase CE07608 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
8289 lipid binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC48263 Hypothetical protein ZC513.1 [Caenorhabditis elegans] ref|NP_505076.1| ZC513.1 [Caenorhabditis elegans] 1.0E-162
blast CAE66148 Hypothetical protein CBG11378 [Caenorhabditis briggsae] 1.0E-142
blast AAC48264 Hypothetical protein ZC513.2 [Caenorhabditis elegans] ref|NP_505075.1| ZC513.2 [Caenorhabditis elegans] 8.0E-95
blast CAB02898 Hypothetical protein F01G10.10 [Caenorhabditis elegans] ref|NP_501879.2| F01G10.10 [Caenorhabditis elegans] 1.0E-15
Protein Domains
Database ID Description E-Value
Pfam IPR001124 EMBL-EBI Lipid-binding serum glycoprotein 6.2E-12
Pfam IPR001124 EMBL-EBI Lipid-binding serum glycoprotein 6.2E-12
Pfam IPR001124 EMBL-EBI Lipid-binding serum glycoprotein 6.4E-6
Sequence
Target Sequence 
>C. ELEGANS:183363_AT
aaaagttttgtgtccacgcagtgcccaacgaaaaagcatcaaacatatgtctgtgttgga
tacttgattccagaaattagacatctctatcctgattcaactgtttcatttgctattttg
ccacatggacttccttatgttatgttcaatagagacggaatgactgttgatattaagaat
cggattctcacatatgccattccagatgatccagctcatttgaacaatcgttcacaaatt
ttagtattttcaattaatgggcaggcagatatcacatttgctccaaccaccgagagtctt
aatgctcatatgaacttgaacagatttaatgtccgacttcatcgttctgctgtacgtgga
attgatgaatcatcaattgccagactctctcccctctcgaaaactttcattgctccaaga
cttagcagtgctgtggagaaagctgtacgctttccaatgcaggat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAAGTTTTGTGTCCACGCAGTGCC 223 133 283 Antisense
GACATCTCTATCCTGATTCAACTGT 204 371 362 Antisense
GCTATTTTGCCACATGGACTTCCTT 631 303 394 Antisense
GAATCGGATTCTCACATATGCCATT 320 329 459 Antisense
TATGCCATTCCAGATGATCCAGCTC 214 657 475 Antisense
GGGCAGGCAGATATCACATTTGCTC 125 493 541 Antisense
TTGCTCCAACCACCGAGAGTCTTAA 508 703 560 Antisense
TTAATGTCCGACTTCATCGTTCTGC 79 683 608 Antisense
GAATCATCAATTGCCAGACTCTCTC 522 327 649 Antisense
CTCCCCTCTCGAAAACTTTCATTGC 492 233 671 Antisense
AGCTGTACGCTTTCCAATGCAGGAT 503 79 723 Antisense
Sequence Source Affymetrix Proprietary Database