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[183362_s_at]

Description F55B11.2 /REP_DB=WormBase Gene ID /WP=CE16117 /TR=O17891 /GB=CAB05901.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 02      6grp_total_sub > Increase      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 2.9
(-2)
A 		3.4
(-1.2)
A 		2.3
(-3)
A 		5.9
(3)
A 		4
B 3
(-3)
A 		3.7
(-2.7)
A 		7.2
(-1.3)
A 		17.6
(3)
A 		15
C 3.5
(-3)
A 		3.8
(-3)
A 		4
(-2.9)
A 		53.4
(3)
A 		50
avr 3.1
(-3) 		3.6
(-2.9) 		4.5
(-2.6) 		25.6
(3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1536
1 2 3 4 5 6 range
A 5.6
(-3)
A 		1.8
(-3)
A 		4.3
(-3)
A 		28.6
(-2.9)
A 		1303.5
(3)
P 		954.1
(1.4)
P 		1302
B 1.5
(-3)
A 		3.7
(-3)
A 		4.9
(-3)
A 		5.3
(-3)
A 		1517.8
(3)
P 		1192.4
(1.7)
P 		1516
C 2.9
(-3)
A 		1.7
(-3)
A 		4.3
(-3)
A 		7.3
(-3)
A 		1537.5
(3)
P 		1279.7
(2)
P 		1536
avr 3.3
(-3) 		2.4
(-3) 		4.5
(-3) 		13.7
(-3) 		1452.9
(3) 		1142.1
(1.7) 		1451
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 1.1
(3)
A 		0.7
(-1.8)
A 		0.6
(-3)
A 		0.9
(0.6)
A 		1
B 1
(-2.8)
A 		0.9
(-3)
A 		1.7
(-1.3)
A 		3.7
(3)
A 		3
C 1.1
(-3)
A 		1.1
(-3)
A 		1.4
(-2.8)
A 		9
(3)
A 		8
avr 1.1
(-2.7) 		0.9
(-3) 		1.2
(-2.5) 		4.5
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 616
1 2 3 4 5 6 range
A 1
(-3)
A 		0.7
(-3)
A 		0.9
(-3)
A 		7.3
(-2.9)
A 		393.3
(3)
P 		232.3
(0.5)
P 		393
B 0.5
(-3)
A 		1.2
(-3)
A 		1.2
(-3)
A 		1.4
(-3)
A 		616.6
(3)
P 		444.6
(1.3)
P 		616
C 1.1
(-3)
A 		0.5
(-3)
A 		1.1
(-3)
A 		1.5
(-3)
A 		497.5
(3)
P 		428.4
(2.2)
P 		497
avr 0.9
(-3) 		0.8
(-3) 		1.1
(-3) 		3.4
(-3) 		502.5
(3) 		368.4
(1.4) 		502
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183362_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9590
Sequence Type Exemplar sequence
Representative Public ID F55B11.2 NCBI
Target Description F55B11.2 /REP_DB=WormBase Gene ID /WP=CE16117 /TR=O17891 /GB=CAB05901.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070347(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070347 NCBI Caenorhabditis elegans F55B11.2 (F55B11.2) mRNA, complete cds. 10/11 None
SNAP00000013151 ENSEMBL cdna:SNAP chromosome:CEL140:IV:14416332:14423247:-1 10/11 None
GENEFINDER00000013189 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:14419678:14423247:-1 10/11 None
F55B11.2 ENSEMBL cdna:known chromosome:CEL140:IV:14422320:14423257:-1 gene:F55B11.2 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:14422325-14423122(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F55B11.2
Entrez Gene 178382 Entrez gene
SwissProt O17891 EMBL-EBI
WormBase CE32898 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05901 Hypothetical protein F55B11.2 [Caenorhabditis elegans] ref|NP_502748.2| F55B11.2 [Caenorhabditis elegans] 1.0E-125
blast CAB05901 Hypothetical protein F55B11.2 [Caenorhabditis elegans] ref|NP_502748.2| F55B11.2 [Caenorhabditis elegans] 1.0E-123
blast CAB05901 Hypothetical protein F55B11.2 [Caenorhabditis elegans] ref|NP_502748.2| F55B11.2 [Caenorhabditis elegans] 1.0E-112
blast CAE69058 Hypothetical protein CBG15069 [Caenorhabditis briggsae] 2.0E-52
blast CAE69058 Hypothetical protein CBG15069 [Caenorhabditis briggsae] 1.0E-41
blast CAI79196 Hypothetical protein F55B11.6 [Caenorhabditis elegans] ref|NP_001023226.1| F55B11.6 [Caenorhabditis elegans] 4.0E-39
blast CAE67816 Hypothetical protein CBG13396 [Caenorhabditis briggsae] 2.0E-35
blast CAE73988 Hypothetical protein CBG21619 [Caenorhabditis briggsae] 3.0E-31
Sequence
Target Sequence 
>C. ELEGANS:183362_S_AT
gccacattttgtaagttttccaggatattgaagaattccagagtaaatgctgaaatggaa
ctaatcagagaagtctacccaaaactgaattctatatcaacactttacaacattggtttg
atgaataaaggacttcaacttgttgagaatgtgaccatctgtctgggagaagaaaaaaga
gacttcaagtgcacactaccaaagattgtagttacttcattggattatgcccaatacatt
ggcaagaaagtttatggagacgctttccactgtttcataaatgttaacgcaatcgaaaca
ttccaaatctgtgcagcggaaaatcaacagccccggaatatccacgaaaacgttttaaat
gatgaaagtgcctacaaaaagatagcacaaccaatagttgaatgtatggccaaaaagatg
tacgagactccatcctgcaccatcgatcgaattgtcgagttgtaccatgctggagaggcc
ggacttgatttgtattactc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCACATTTTGTAAGTTTTCCAGGA 408 277 22 Antisense
GAAGTCTACCCAAAACTGAATTCTA 153 337 91 Antisense
GAGAATGTGACCATCTGTCTGGGAG 406 391 166 Antisense
ATGGAGACGCTTTCCACTGTTTCAT 684 51 275 Antisense
GAAACATTCCAAATCTGTGCAGCGG 650 355 316 Antisense
AAATCAACAGCCCCGGAATATCCAC 325 117 342 Antisense
AAGATGTACGAGACTCCATCCTGCA 545 155 436 Antisense
CATCCTGCACCATCGATCGAATTGT 371 211 452 Antisense
AATTGTCGAGTTGTACCATGCTGGA 520 177 471 Antisense
CCATGCTGGAGAGGCCGGACTTGAT 616 271 486 Antisense
AGGCCGGACTTGATTTGTATTACTC 695 53 497 Antisense
Sequence Source Affymetrix Proprietary Database