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[183361_at]

Description K01D12.8 /REP_DB=WormBase Gene ID /WP=CE06047 /TR=Q21091 /GB=CAA99868.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 30      4grp_total > 40      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 102
1 2 3 4 range
A 25
(-3)
A 		43.9
(-0.6)
P 		71.4
(3)
A 		36
(-1.6)
A 		46
B 4.8
(-3)
A 		44.4
(1.1)
A 		63
(3)
A 		50.8
(1.7)
M 		58
C 4.5
(-3)
A 		87.4
(1.9)
A 		106.6
(3)
P 		52.2
(-0.2)
P 		102
avr 11.4
(-3) 		58.6
(1.1) 		80.3
(3) 		46.3
(0) 		69

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 5.3
(-3)
A 		14.1
(-0.7)
A 		28
(3)
A 		14.1
(-0.7)
A 		5.7
(-2.9)
A 		5.3
(-3)
A 		23
B 2.8
(-2.7)
A 		35.3
(2.3)
A 		8.2
(-1.9)
A 		39.5
(3)
A 		3.7
(-2.6)
A 		0.8
(-3)
A 		39
C 8.8
(-1.8)
A 		30.5
(3)
A 		9.7
(-1.6)
A 		3.9
(-2.8)
A 		3.2
(-3)
A 		15.2
(-0.4)
A 		27
avr 5.6
(-2.6) 		26.6
(3) 		15.3
(-0) 		19.2
(1) 		4.2
(-3) 		7.1
(-2.2) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 9.1
(-1.3)
A 		9.5
(-1.1)
P 		18.7
(3)
A 		5.3
(-3)
A 		13
B 1.5
(-3)
A 		11
(1.4)
A 		14.6
(3)
A 		10.8
(1.3)
M 		13
C 1.5
(-3)
A 		25.1
(1)
A 		37.1
(3)
P 		8.8
(-1.8)
P 		36
avr 4
(-3) 		15.2
(0.4) 		23.5
(3) 		8.3
(-1.7) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 1
(-3)
A 		5
(1.7)
A 		6.1
(3)
A 		3.6
(0.1)
A 		1.7
(-2.2)
A 		1.3
(-2.6)
A 		5
B 1
(-2.6)
A 		11.8
(3)
A 		2
(-2.1)
A 		10.5
(2.3)
A 		1.5
(-2.4)
A 		0.3
(-3)
A 		12
C 3.3
(-1.2)
A 		9.3
(3)
A 		2.5
(-1.8)
A 		0.8
(-3)
A 		1
(-2.9)
A 		5.1
(0)
A 		9
avr 1.8
(-2.7) 		8.7
(3) 		3.5
(-1.3) 		5
(-0) 		1.4
(-3) 		2.2
(-2.3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183361_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13231
Sequence Type Exemplar sequence
Representative Public ID K01D12.8 NCBI
Target Description K01D12.8 /REP_DB=WormBase Gene ID /WP=CE06047 /TR=Q21091 /GB=CAA99868.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073706(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073706 NCBI Caenorhabditis elegans K01D12.8 (K01D12.8) mRNA, complete cds. 9/11 None
K01D12.8 ENSEMBL cdna:known chromosome:CEL140:V:12405255:12405745:1 gene:K01D12.8 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000007095 8/11 Cross Hyb Matching Probes None
GENEFINDER00000007105 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12405254-12405745(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K01D12.8
Entrez Gene 186846 Entrez gene
SwissProt Q21091 EMBL-EBI
WormBase CE34199 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA99868 Hypothetical protein K01D12.8 [Caenorhabditis elegans] ref|NP_506107.2| K01D12.8 [Caenorhabditis elegans] 2.0E-27
blast CAA99865 Hypothetical protein K01D12.9 [Caenorhabditis elegans] ref|NP_506108.1| K01D12.9 [Caenorhabditis elegans] 6.0E-19
blast CAE69631 Hypothetical protein CBG15872 [Caenorhabditis briggsae] 1.0E-18
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506107.2 1 7-25
K01D12.8 1 7-25
Sequence
Target Sequence 
>C. ELEGANS:183361_AT
gcaatcactttagcatgtgctccacatatgccaaagagagacgtcaaacatggttattgc
aaattctatatgaaatttattaaaacattcccaattccagttgacggaactagtgacttt
gatagttcccgtaagaagagagactcatcttcaagttcttcatcaagctcttctgaatct
ggaggatctggtggatctggcggaggaaagggtggaaaaggaggaagtggaggtggtggc
ggtggaagtggtggaaagagatataaacgttccaagaagaaggataccaaatgttacgag
tatgaagatggaagcaaagatgagggagcggttcttaacaagaatgttaagtataccgta
actgtcaccaagacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAATCACTTTAGCATGTGCTCCAC 159 323 55 Antisense
CTTTAGCATGTGCTCCACATATGCC 260 223 62 Antisense
GAGACGTCAAACATGGTTATTGCAA 520 393 92 Antisense
AAACATTCCCAATTCCAGTTGACGG 214 129 137 Antisense
GTTGACGGAACTAGTGACTTTGATA 42 439 154 Antisense
GACTTTGATAGTTCCCGTAAGAAGA 604 371 169 Antisense
GTTCCCGTAAGAAGAGAGACTCATC 93 441 179 Antisense
CAAGCTCTTCTGAATCTGGAGGATC 470 185 218 Antisense
GAGGATCTGGTGGATCTGGCGGAGG 445 403 236 Antisense
GATGAGGGAGCGGTTCTTAACAAGA 460 407 373 Antisense
GTATACCGTAACTGTCACCAAGACC 112 453 405 Antisense
Sequence Source Affymetrix Proprietary Database