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[183358_at]

Description C15H9.5 /REP_DB=WormBase Gene ID /WP=CE27687 /TR=Q18024 /GB=AAB52667.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 41      6grp_high1_10_10 > 13      4grp_highest_8_8 > 37      4grp_high_8_8 > 01      6grp_highest_nonorm > 80      6grp_total > 14      4grp_total > 06      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 176
1 2 3 4 range
A 242.4
(0.9)
P 		199.3
(-2.7)
P 		196
(-3)
P 		268.2
(3)
P 		72
B 243.9
(1)
P 		180.9
(-2.3)
P 		168.6
(-3)
P 		281.4
(3)
P 		113
C 229.2
(2.7)
P 		105.3
(-3)
P 		205.9
(1.6)
P 		235.7
(3)
P 		130
avr 238.5
(1.6) 		161.8
(-3) 		190.2
(-1.3) 		261.8
(3) 		100

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 277
1 2 3 4 5 6 range
A 371.4
(3)
P 		354.3
(2.6)
P 		236.4
(-0.3)
P 		221.5
(-0.7)
P 		133.3
(-2.9)
P 		129.6
(-3)
P 		242
B 298.3
(3)
P 		235.7
(1.2)
P 		150.8
(-1.3)
P 		203.9
(0.2)
P 		94.5
(-3)
P 		116.7
(-2.3)
P 		204
C 268.4
(2.4)
P 		287.7
(3)
P 		207.3
(0.5)
P 		176.6
(-0.4)
P 		94.1
(-3)
P 		178.1
(-0.4)
P 		194
avr 312.7
(3) 		292.6
(2.4) 		198.2
(-0.3) 		200.7
(-0.3) 		107.3
(-3) 		141.5
(-2) 		205
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 88.3
(3)
P 		43.3
(-2.5)
P 		51.2
(-1.5)
P 		39.3
(-3)
P 		49
B 77.8
(3)
P 		44.7
(-2.1)
P 		39.1
(-3)
P 		60
(0.2)
P 		39
C 75.9
(3)
P 		30.3
(-3)
P 		71.8
(2.5)
P 		39.7
(-1.8)
P 		46
avr 80.7
(3) 		39.4
(-3) 		54
(-0.9) 		46.3
(-2) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 96
1 2 3 4 5 6 range
A 68.5
(-0.7)
P 		126
(3)
P 		51.5
(-1.7)
P 		56.2
(-1.4)
P 		40.2
(-2.4)
P 		31.5
(-3)
P 		95
B 103.8
(3)
P 		78.5
(0.7)
P 		36.6
(-3)
P 		54
(-1.4)
P 		38.4
(-2.8)
P 		43.5
(-2.4)
P 		67
C 99.5
(3)
P 		87.8
(2)
P 		52.8
(-1.1)
P 		35.5
(-2.6)
P 		30.4
(-3)
P 		59.6
(-0.5)
P 		69
avr 90.6
(2.3) 		97.4
(3) 		47
(-1.9) 		48.6
(-1.8) 		36.3
(-3) 		44.9
(-2.2) 		61
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183358_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16006
Sequence Type Exemplar sequence
Representative Public ID C15H9.5 NCBI
Target Description C15H9.5 /REP_DB=WormBase Gene ID /WP=CE27687 /TR=Q18024 /GB=AAB52667.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076619(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076619 NCBI Caenorhabditis elegans C15H9.5 (C15H9.5) mRNA, complete cds. 9/11 None
SNAP00000042800 ENSEMBL cdna:SNAP chromosome:CEL140:X:6093270:6096810:1 9/11 None
GENEFINDER00000042816 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:6093373:6100540:1 11/11 None
C15H9.5.1 ENSEMBL cdna:known chromosome:CEL140:X:6093244:6097522:1 gene:C15H9.5 9/11 None
C15H9.5.2 ENSEMBL cdna:known chromosome:CEL140:X:6093258:6097522:1 gene:C15H9.5 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6093372-6096896(+) 96.69 100.0
Public Domain and Genome References
Gene Title
Ensembl C15H9.5
Entrez Gene 180881 Entrez gene
SwissProt Q18024 EMBL-EBI
WormBase CE35402 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:249229_AT expressed protein at
CANINE:1584152_AT similar to G protein-coupled receptor 108 cfa
CANINE_2:CFA.11827.1.A1_AT similar to G protein-coupled receptor 108 cfa
CANINE_2:CFAAFFX.28459.1.S1_S_AT similar to G protein-coupled receptor 108 cfa
DROSGENOME1:144742_AT dm
DROSOPHILA_2:1632894_AT dm
HU35KSUBD:RC_W88995_AT G protein-coupled receptor 108 hs
U133_X3P:HS.167641.0.S1_3P_AT G protein-coupled receptor 108 hs
HG-U133_PLUS_2:225058_AT G protein-coupled receptor 108 hs
HG-U133B:225058_AT G protein-coupled receptor 108 hs
HG-U95B:54694_AT G protein-coupled receptor 108 hs
MOE430A:1426078_A_AT G protein-coupled receptor 108 mm
MOUSE430A_2:1426078_A_AT G protein-coupled receptor 108 mm
MOUSE430_2:1426078_A_AT G protein-coupled receptor 108 mm
MG-U74BV2:162729_AT G protein-coupled receptor 108 mm
RG-U34C:H33832_I_AT G protein-coupled receptor 108 rn
RG-U34C:H33832_F_AT G protein-coupled receptor 108 rn
RG-U34C:RC_AI179089_AT G protein-coupled receptor 108 rn
RG-U34C:RC_AI136630_S_AT G protein-coupled receptor 108 rn
RAE230A:1389188_AT G protein-coupled receptor 108 rn
RAT230_2:1389188_AT G protein-coupled receptor 108 rn
Protein Similarities
Method ID Description E-Value
blast AAB52667 Hypothetical protein C15H9.5 [Caenorhabditis elegans] ref|NP_509020.2| C15H9.5 [Caenorhabditis elegans] 0.0
blast CAE68867 Hypothetical protein CBG14830 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR009637 EMBL-EBI Lung seven transmembrane receptor 5.1E-50
Pfam IPR009637 EMBL-EBI Lung seven transmembrane receptor 5.1E-50
Pfam IPR009637 EMBL-EBI Lung seven transmembrane receptor 3.1E-45
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509020.2 7 260-280,293-315,330-352,365-384,399-421,441-463,473-492
C15H9.5.1 7 260-280,293-315,330-352,365-384,399-421,441-463,473-492
C15H9.5.2 7 260-280,293-315,330-352,365-384,399-421,441-463,473-492
SNAP00000042800 7 204-224,237-259,274-296,309-328,343-365,385-407,417-436
GENEFINDER00000042816 7 244-264,277-299,314-336,349-368,383-405,426-448,474-496
Sequence
Target Sequence 
>C. ELEGANS:183358_AT
tgctgcgcattagtcgcttttccaattgtttggtcaattcaacacttggtagagggagcc
actacagatggaaaagccgcagccaatttggaaaaactacgtttatttcgacaattttat
attctcgttgtcgtctacatctactgcacgaggttttttggcttcatattactcccagcg
ccagtgggaaaagtgttgaaaccccacttttgtggtgccaaaattccaaatatcacacac
ttaatgcctgtgaacctccaatggaccattgtcgctgcagtcgaaatggttaccttcgca
tttttcatcatcgttggctacaaattccggcctgccaattcacacaattatctgctcttg
aactcggattttgatagctatgatgtggagacatcgccgaaagaagataggaaagataaa
gaaaacaatgagcaagaaattgatgagcaattcctgacaaaagcctactcagatgccaat
gtgtcgaggagattggtttcagatgaatcatcaaacaaccaaaccgactatccccatcag
aaacttttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCTGCGCATTAGTCGCTTTTCCAA 445 581 1237 Antisense
TATTCTCGTTGTCGTCTACATCTAC 54 665 1356 Antisense
TACTGCACGAGGTTTTTTGGCTTCA 708 645 1378 Antisense
TTTTGGCTTCATATTACTCCCAGCG 216 677 1392 Antisense
TGAAACCCCACTTTTGTGGTGCCAA 419 569 1433 Antisense
TAATGCCTGTGAACCTCCAATGGAC 518 635 1478 Antisense
GGACCATTGTCGCTGCAGTCGAAAT 324 523 1499 Antisense
GTTACCTTCGCATTTTTCATCATCG 215 447 1525 Antisense
TGGCTACAAATTCCGGCCTGCCAAT 129 545 1551 Antisense
AAGCCTACTCAGATGCCAATGTGTC 164 149 1697 Antisense
CGACTATCCCCATCAGAAACTTTTG 684 239 1761 Antisense
Sequence Source Affymetrix Proprietary Database