[Home] | [Total List]

[183357_at]

Description Y50E8A.1 /REP_DB=WormBase Gene ID /WP=CE22303 /TR=Q9NAF6 /GB=CAB55044.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 16      6grp_high1_10_10 > 51      4grp_highest_8_8 > 21      4grp_high_8_8 > 07      6grp_highest_nonorm > 71      6grp_total > 42      4grp_total > 0      6grp_highest_sub > 03_04      6grp_high1_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 169
1 2 3 4 range
A 161.6
(-0.5)
P 		92.6
(-3)
P 		131.6
(-1.6)
P 		261.4
(3)
P 		169
B 131.1
(-3)
P 		140.6
(-2)
P 		159.9
(0)
P 		188.6
(3)
P 		58
C 147.9
(-3)
P 		169.4
(-1.7)
P 		218.3
(1.4)
P 		244.5
(3)
P 		97
avr 146.9
(-2.2) 		134.2
(-3) 		169.9
(-0.8) 		231.5
(3) 		97

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 408
1 2 3 4 5 6 range
A 304.7
(-0.9)
P 		300.5
(-1)
P 		572.6
(3)
P 		345.1
(-0.3)
P 		310.3
(-0.9)
P 		164.3
(-3)
P 		408
B 348.7
(1.3)
P 		260.4
(-1.9)
P 		368.6
(2)
P 		395
(3)
P 		382.7
(2.6)
P 		230.2
(-3)
P 		165
C 312.5
(1)
P 		321.1
(1.4)
P 		271
(-0.9)
P 		356
(3)
P 		355.5
(3)
P 		225.8
(-3)
P 		130
avr 322
(0.5) 		294
(-0.3) 		404.1
(3) 		365.4
(1.8) 		349.5
(1.3) 		206.8
(-3) 		197
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 58.8
(3)
P 		20.1
(-3)
P 		34.4
(-0.8)
P 		38.3
(-0.2)
P 		39
B 41.8
(3)
P 		34.7
(-3)
P 		37
(-1.1)
P 		40.2
(1.6)
P 		7
C 49
(-1.7)
P 		48.7
(-1.7)
P 		76.1
(3)
P 		41.2
(-3)
P 		35
avr 49.9
(3) 		34.5
(-3) 		49.2
(2.7) 		39.9
(-0.9) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 116
1 2 3 4 5 6 range
A 56.2
(-1.9)
P 		106.9
(1.7)
P 		124.7
(3)
P 		87.5
(0.4)
P 		93.6
(0.8)
P 		40
(-3)
P 		85
B 121.3
(0.1)
P 		86.7
(-2.9)
P 		89.5
(-2.7)
P 		104.6
(-1.4)
P 		155.5
(3)
P 		85.8
(-3)
P 		70
C 115.8
(3)
P 		98
(0.7)
P 		69
(-3)
P 		71.6
(-2.7)
P 		115
(2.9)
P 		75.6
(-2.2)
P 		47
avr 97.8
(0.4) 		97.2
(0.3) 		94.4
(0) 		87.9
(-0.7) 		121.4
(3) 		67.1
(-3) 		54
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183357_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13224
Sequence Type Exemplar sequence
Representative Public ID Y50E8A.1 NCBI
Target Description Y50E8A.1 /REP_DB=WormBase Gene ID /WP=CE22303 /TR=Q9NAF6 /GB=CAB55044.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074234(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074234 NCBI Caenorhabditis elegans Y50E8A.1 (Y50E8A.1) mRNA, complete cds. 11/11 None
SNAP00000008976 ENSEMBL cdna:SNAP chromosome:CEL140:V:14729496:14729829:1 11/11 None
GENEFINDER00000009989 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14729496:14729829:1 11/11 None
Y50E8A.1 ENSEMBL cdna:known chromosome:CEL140:V:14729496:14729829:1 gene:Y50E8A.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14729495-14729829(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y50E8A.1
Entrez Gene 190103 Entrez gene
SwissProt Q9NAF6 EMBL-EBI
WormBase CE22303 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB55044 Hypothetical protein Y50E8A.1 [Caenorhabditis elegans] ref|NP_506635.1| Y50E8A.1 [Caenorhabditis elegans] 9.0E-44
blast CAE60839 Hypothetical protein CBG04548 [Caenorhabditis briggsae] 4.0E-30
Sequence
Target Sequence 
>C. ELEGANS:183357_AT
aacttcattattcactacattcttcttatgagtctcagcctctcaattgtcacagcccga
ccaccaggacgaaatgatcaagagaaaaagctaactggtggggaacctttggaattgggt
gactacgtagactacttcgaagatttcttcccagttttgaataattccactaaattaaat
gaaaactaccaatatgaaaagaagaaatacttaacttcagttgccgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACTTCATTATTCACTACATTCTTC 557 139 16 Antisense
TCATTATTCACTACATTCTTCTTAT 674 619 20 Antisense
ACATTCTTCTTATGAGTCTCAGCCT 676 103 32 Antisense
TATGAGTCTCAGCCTCTCAATTGTC 696 655 42 Antisense
GCCCGACCACCAGGACGAAATGATC 126 287 70 Antisense
CAAGAGAAAAAGCTAACTGGTGGGG 411 123 94 Antisense
CCTTTGGAATTGGGTGACTACGTAG 421 191 121 Antisense
TTGGGTGACTACGTAGACTACTTCG 486 707 130 Antisense
GTAGACTACTTCGAAGATTTCTTCC 541 455 142 Antisense
TACTTCGAAGATTTCTTCCCAGTTT 206 645 148 Antisense
GAAATACTTAACTTCAGTTGCCGGA 513 363 219 Antisense
Sequence Source Affymetrix Proprietary Database