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[183356_at]

Description C09B8.3 /REP_DB=WormBase Gene ID /WP=CE02463 /TR=Q17845 /GB=AAA68801.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 70      4grp_high_8_8 > 37      6grp_total > 91      4grp_total > 42      6grp_high1_sub > 04      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 164
1 2 3 4 range
A 46.5
(-3)
P 		159.6
(3)
P 		122.4
(1)
P 		69.7
(-1.8)
P 		113
B 56.1
(-2.2)
P 		196.8
(3)
P 		101.3
(-0.5)
P 		32.9
(-3)
A 		164
C 55.8
(-3)
P 		150.8
(3)
P 		134.5
(2)
P 		98.5
(-0.3)
P 		95
avr 52.8
(-3) 		169.1
(3) 		119.4
(0.4) 		67
(-2.3) 		116

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 112
1 2 3 4 5 6 range
A 95.7
(1.8)
P 		99.5
(2.1)
P 		80.2
(0.6)
P 		102.7
(2.4)
P 		111.1
(3)
P 		32.4
(-3)
A 		79
B 106.3
(1.6)
P 		107.8
(1.7)
P 		101.6
(1.2)
P 		123.8
(3)
P 		108.3
(1.7)
P 		50.6
(-3)
P 		73
C 77.4
(-1.1)
P 		130.5
(2.1)
P 		87.2
(-0.5)
P 		144.7
(3)
P 		83.4
(-0.7)
P 		45.7
(-3)
P 		99
avr 93.1
(0.7) 		112.6
(2.2) 		89.7
(0.5) 		123.7
(3) 		100.9
(1.3) 		42.9
(-3) 		81
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 16.9
(-1.4)
P 		34.6
(3)
P 		32
(2.4)
P 		10.2
(-3)
P 		24
B 17.9
(-1.4)
P 		48.6
(3)
P 		23.5
(-0.6)
P 		7
(-3)
A 		42
C 18.5
(-2.6)
P 		43.4
(2.3)
P 		46.9
(3)
P 		16.6
(-3)
P 		30
avr 17.8
(-1.7) 		42.2
(3) 		34.1
(1.4) 		11.3
(-3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 17.6
(-0.9)
P 		35.4
(3)
P 		17.5
(-0.9)
P 		26
(0.9)
P 		33.5
(2.6)
P 		7.9
(-3)
A 		28
B 37
(1.3)
P 		35.9
(1.1)
P 		24.7
(-1.6)
P 		32.8
(0.3)
P 		44
(3)
P 		18.9
(-3)
P 		25
C 28.7
(0.3)
P 		39.8
(3)
P 		22.2
(-1.3)
P 		29.1
(0.4)
P 		27
(-0.1)
P 		15.3
(-3)
P 		25
avr 27.8
(0.6) 		37
(3) 		21.5
(-1) 		29.3
(1) 		34.8
(2.4) 		14
(-3) 		23
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183356_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16622
Sequence Type Exemplar sequence
Representative Public ID C09B8.3 NCBI
Target Description C09B8.3 /REP_DB=WormBase Gene ID /WP=CE02463 /TR=Q17845 /GB=AAA68801.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076604(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076604 NCBI Caenorhabditis elegans C09B8.3 (C09B8.3) mRNA, complete cds. 11/11 None
SNAP00000035900 ENSEMBL cdna:SNAP chromosome:CEL140:X:6007161:6009788:-1 11/11 None
GENEFINDER00000035912 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:6007161:6010591:-1 11/11 None
C09B8.3 ENSEMBL cdna:known chromosome:CEL140:X:6007161:6011268:-1 gene:C09B8.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6007160-6011268(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C09B8.3
Entrez Gene 182439 Entrez gene
SwissProt Q17845 EMBL-EBI
WormBase CE02463 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA68801 Hypothetical protein C09B8.3 [Caenorhabditis elegans] ref|NP_509005.1| C09B8.3 [Caenorhabditis elegans] 0.0
blast CAE68853 Hypothetical protein CBG14815 [Caenorhabditis briggsae] 1.0E-154
blast CAE68853 Hypothetical protein CBG14815 [Caenorhabditis briggsae] 1.0E-144
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509005.1 1 228-250
C09B8.3 1 228-250
SNAP00000035900 1 220-242
GENEFINDER00000035912 1 237-259
Sequence
Target Sequence 
>C. ELEGANS:183356_AT
aagttctcttatcatggatccattcaaggagcattccacaactctggctccggaagaaac
taccgaagacggttccggaactacgttggactcatcgagcccatcaaatttgactgaaac
ggttattccaacatggatgtacgttgtaatagtgatatgtgtcgtggttactgtttttgt
gctagttttcttcgtgttcttcatcatcaaatatatcaaaaaccattcaaaatctgctca
aatctatccaatcgaatcaaatcaaaaatctggcggcccaatcttcaacgtaattcaaaa
gcatgaaaacaatggagatgaaaattatcaactggaaagaggaatctgcatgaacagaag
accaagtatcgactctgaaaatagtcatcaaccaatgagcgagcatagtgaatgcaccgc
agatgcaagttctatagcaagtggggagaatgagaccaagagacacggttttgaaaacta
ttcaaaagagcagtcaactaataacacagcaaaggttaccatagatgatggccagttatc
tacagacagagtaatcgctagacgtaacagtgacatgagacttgcacctcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGTTCTCTTATCATGGATCCATTC 221 157 555 Antisense
CAAGGAGCATTCCACAACTCTGGCT 12 185 579 Antisense
CAACTCTGGCTCCGGAAGAAACTAC 206 185 593 Antisense
GAACTACGTTGGACTCATCGAGCCC 408 349 632 Antisense
GACTCATCGAGCCCATCAAATTTGA 24 373 643 Antisense
GTCGTGGTTACTGTTTTTGTGCTAG 330 435 715 Antisense
TTTGTGCTAGTTTTCTTCGTGTTCT 637 665 730 Antisense
ATCTGCTCAAATCTATCCAATCGAA 552 33 786 Antisense
AAAATCTGGCGGCCCAATCTTCAAC 353 131 819 Antisense
GATGATGGCCAGTTATCTACAGACA 410 411 1078 Antisense
CAGTGACATGAGACTTGCACCTCCA 137 209 1122 Antisense
Sequence Source Affymetrix Proprietary Database