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[183355_s_at]

Description C05C12.3 /REP_DB=WormBase Gene ID /WP=CE20482 /TR=Q17652 /GB=CAA92726.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 73      6grp_high1_10_10 > 47      4grp_highest_8_8 > 38      4grp_high_8_8 > 03      6grp_highest_nonorm > 60      6grp_total > 37      4grp_total > 05      6grp_highest_sub > Cu      6grp_cgc > 16      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1732
1 2 3 4 range
A 919
(-0.7)
P 		305.1
(-3)
P 		292.4
(-3)
P 		1942.9
(3)
P 		1651
B 1093.1
(0.5)
P 		307.2
(-2.9)
P 		287
(-3)
P 		1678.4
(3)
P 		1391
C 771.5
(-0)
P 		211.4
(-3)
P 		414.1
(-1.9)
P 		1335.4
(3)
P 		1124
avr 927.9
(-0.2) 		274.6
(-3) 		331.2
(-2.8) 		1652.2
(3) 		1378

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 361
1 2 3 4 5 6 range
A 555.2
(3)
P 		480.8
(1.7)
P 		279.7
(-1.9)
P 		233.7
(-2.7)
P 		219.4
(-3)
P 		511.8
(2.2)
P 		336
B 487.5
(3)
P 		403.3
(1.3)
P 		363.3
(0.4)
P 		290.7
(-1)
P 		195.9
(-3)
P 		453.3
(2.3)
P 		292
C 556.6
(3)
P 		463.7
(1.2)
P 		278.7
(-2.4)
P 		264.1
(-2.6)
P 		245.9
(-3)
P 		555.3
(3)
P 		311
avr 533.1
(3) 		449.3
(1.4) 		307.2
(-1.3) 		262.8
(-2.2) 		220.4
(-3) 		506.8
(2.5) 		313
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 297
1 2 3 4 range
A 334.6
(3)
P 		66.2
(-3)
P 		76.4
(-2.8)
P 		284.4
(1.9)
P 		268
B 348.6
(2.8)
P 		75.9
(-2.8)
P 		66.5
(-3)
P 		357.7
(3)
P 		291
C 255.4
(3)
P 		60.8
(-3)
P 		144.3
(-0.4)
P 		225.2
(2.1)
P 		195
avr 312.9
(3) 		67.6
(-3) 		95.7
(-2.3) 		289.1
(2.4) 		245

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 153
1 2 3 4 5 6 range
A 102.4
(-0.7)
P 		171
(3)
P 		60.9
(-2.9)
P 		59.3
(-3)
P 		66.2
(-2.6)
P 		124.6
(0.5)
P 		112
B 169.6
(3)
P 		134.3
(0.7)
P 		88.2
(-2.3)
P 		77
(-3)
P 		79.6
(-2.8)
P 		169
(3)
P 		93
C 206.3
(3)
P 		141.5
(0.5)
P 		70.9
(-2.3)
P 		53.1
(-3)
P 		79.6
(-2)
P 		185.9
(2.2)
P 		153
avr 159.4
(3) 		148.9
(2.3) 		73.3
(-2.4) 		63.1
(-3) 		75.1
(-2.3) 		159.8
(3) 		97
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183355_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9548
Sequence Type Exemplar sequence
Representative Public ID C05C12.3 NCBI
Target Description C05C12.3 /REP_DB=WormBase Gene ID /WP=CE20482 /TR=Q17652 /GB=CAA92726.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069710(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069710 NCBI Caenorhabditis elegans Gon-Two Like (TRP subfamily) family member (gtl-1) (gtl-1) mRNA, complete cds. 11/11 None
SNAP00000019476 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11248975:11254014:-1 11/11 None
GENEFINDER00000019483 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11248975:11253830:-1 11/11 None
C05C12.3 ENSEMBL cdna:known chromosome:CEL140:IV:11248873:11259436:-1 gene:C05C12.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11248980-11259442(-) 98.77 100.0
Public Domain and Genome References
Gene Title
Gene Symbol gtl-1
Ensembl C05C12.3
Entrez Gene 178031 Entrez gene
SwissProt Q17652 EMBL-EBI
WormBase CE33754 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6811 ion transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5216 ion channel activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA92726 Hypothetical protein C05C12.3 [Caenorhabditis elegans] gb|AAU25950.1| GTL-1 [Caenorhabditis elegans] ref|NP_502111.3| Gon-Two Like (TRP subfamily) family member (gtl-1) [Caenorhabditis elegans] 0.0
blast CAC81667 putative TRP homologous cation channel [Caenorhabditis elegans] 0.0
blast CAE62030 Hypothetical protein CBG06044 [Caenorhabditis briggsae] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502111.3 6 1078-1100,1113-1135,1150-1172,1179-1201,1211-1233,1301-1323
C05C12.3 6 1078-1100,1113-1135,1150-1172,1179-1201,1211-1233,1301-1323
SNAP00000019476 6 450-472,485-507,522-544,551-573,583-605,673-695
GENEFINDER00000019483 6 440-462,475-497,512-534,541-563,573-595,663-685
Sequence
Target Sequence 
>C. ELEGANS:183355_S_AT
gtagatggtcctagtccaatcggctctagaagaacatcgggacagtatctgaagagagat
tcattgcaagcaaaaaagaaaataactgaaaatcgaagatcttctttagagcaaccaaag
attccatcaattcagttcaatctcatggaagatcaagatgaatcagctgctgagtcagca
acggaagaagtttcgataagcattcctgttccacaaatgagagttcgtcaagtcacagaa
agtgataagtctgatttatcggaagatgatttgatcacaagagaagatgcaccacctact
agtattaatttgccacgtggcccgcgtcgacatgctctctactcaaccattgcagatgca
attgaaactgaagatgatttttatgctgacagtccagttccaatgccaatgacaccagtt
cagccagcggatgggtcttttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTAGATGGTCCTAGTCCAATCGGCT 366 457 4645 Antisense
GGCTCTAGAAGAACATCGGGACAGT 157 539 4666 Antisense
TTAGAGCAACCAAAGATTCCATCAA 670 681 4750 Antisense
ATTCCATCAATTCAGTTCAATCTCA 173 7 4765 Antisense
GTTTCGATAAGCATTCCTGTTCCAC 413 451 4834 Antisense
CCTGTTCCACAAATGAGAGTTCGTC 268 267 4849 Antisense
GAAGATGCACCACCTACTAGTATTA 310 337 4927 Antisense
CTCTCTACTCAACCATTGCAGATGC 486 231 4979 Antisense
ACAGTCCAGTTCCAATGCCAATGAC 48 109 5033 Antisense
AATGCCAATGACACCAGTTCAGCCA 560 167 5046 Antisense
GTTCAGCCAGCGGATGGGTCTTTTT 332 445 5062 Antisense
Sequence Source Affymetrix Proprietary Database