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[183354_at]

Description F46B3.15 /REP_DB=WormBase Gene ID /WP=CE18694 /TR=Q9XV23 /GB=CAB04396.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 65      4grp_total > 08      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 89
1 2 3 4 range
A 6.2
(-3)
A 		6
(-3)
A 		52.2
(0.1)
A 		94.2
(3)
A 		88
B 16.4
(-3)
A 		28.5
(0.3)
A 		34.9
(2.1)
A 		38.2
(3)
A 		22
C 11.1
(-2.4)
A 		5.6
(-3)
A 		9.2
(-2.6)
A 		64.2
(3)
A 		59
avr 11.2
(-3) 		13.4
(-2.8) 		32.1
(-0.7) 		65.5
(3) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 74
1 2 3 4 5 6 range
A 41.6
(0.1)
A 		7.7
(-2.9)
A 		31.2
(-0.8)
A 		75.8
(3)
A 		6
(-3)
A 		36.8
(-0.4)
A 		70
B 3.8
(-3)
A 		6
(-2.6)
A 		39.2
(3)
A 		3.6
(-3)
A 		4.1
(-2.9)
A 		31.5
(1.7)
A 		36
C 21.8
(2.6)
A 		18.8
(1.7)
A 		12.1
(-0.2)
A 		2.2
(-3)
A 		23.3
(3)
A 		14.1
(0.4)
A 		21
avr 22.4
(1.2) 		10.8
(-3) 		27.5
(3) 		27.2
(2.9) 		11.1
(-2.9) 		27.5
(3) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 2.2
(-2.6)
A 		1.3
(-3)
A 		13.7
(3)
A 		13.8
(3)
A 		13
B 5.2
(-3)
A 		7
(0.7)
A 		8.1
(3)
A 		8.1
(3)
A 		3
C 3.7
(-1.6)
A 		1.6
(-3)
A 		3.2
(-2)
A 		10.8
(3)
A 		9
avr 3.7
(-2.7) 		3.3
(-3) 		8.3
(0.9) 		10.9
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 7.7
(-1)
A 		2.7
(-2.7)
A 		6.8
(-1.3)
A 		19.2
(3)
A 		1.8
(-3)
A 		9
(-0.5)
A 		17
B 1.3
(-2.8)
A 		2
(-2.4)
A 		9.5
(1.8)
A 		1
(-3)
A 		1.7
(-2.6)
A 		11.7
(3)
A 		11
C 8.1
(3)
A 		5.7
(1.1)
A 		3.1
(-0.9)
A 		0.4
(-3)
A 		7.5
(2.5)
A 		4.7
(0.4)
A 		8
avr 5.7
(-0.4) 		3.5
(-3) 		6.5
(0.6) 		6.9
(1.1) 		3.7
(-2.8) 		8.5
(3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183354_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12635
Sequence Type Exemplar sequence
Representative Public ID F46B3.15 NCBI
Target Description F46B3.15 /REP_DB=WormBase Gene ID /WP=CE18694 /TR=Q9XV23 /GB=CAB04396.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075583(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075583 NCBI Caenorhabditis elegans F46B3.15 (F46B3.15) mRNA, complete cds. 11/11 None
SNAP00000039767 ENSEMBL cdna:SNAP chromosome:CEL140:V:20631036:20631746:-1 11/11 None
GENEFINDER00000039773 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:20631036:20631746:-1 11/11 None
F46B3.15 ENSEMBL cdna:known chromosome:CEL140:V:20631523:20631746:-1 gene:F46B3.15 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20631522-20631746(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F46B3.15
Entrez Gene 185837 Entrez gene
SwissProt Q9XV23 EMBL-EBI
WormBase CE18694 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04396 Hypothetical protein F46B3.15 [Caenorhabditis elegans] ref|NP_507984.1| F46B3.15 [Caenorhabditis elegans] 4.0E-28
blast CAB04398 Hypothetical protein F46B3.9 [Caenorhabditis elegans] ref|NP_507980.1| F46B3.9 [Caenorhabditis elegans] 8.0E-26
blast CAB04396 Hypothetical protein F46B3.15 [Caenorhabditis elegans] ref|NP_507984.1| F46B3.15 [Caenorhabditis elegans] 4.0E-24
blast CAB04398 Hypothetical protein F46B3.9 [Caenorhabditis elegans] ref|NP_507980.1| F46B3.9 [Caenorhabditis elegans] 1.0E-14
blast CAB04397 Hypothetical protein F46B3.14 [Caenorhabditis elegans] ref|NP_507983.1| F46B3.14 [Caenorhabditis elegans] 1.0E-13
blast CAB04397 Hypothetical protein F46B3.14 [Caenorhabditis elegans] ref|NP_507983.1| F46B3.14 [Caenorhabditis elegans] 9.0E-12
Sequence
Target Sequence 
>C. ELEGANS:183354_AT
gaaaatgtttttgtgtcttctattgatcgaagccgttggtgctcgagttgctccagcttc
agttgttctagctccagttgattctgaagggcaacattgcggtatcgttgaatgccgtcc
gggttacgactgcgtcggtggaaaatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAAATGTTTTTGTGTCTTCTATTG 520 353 15 Antisense
GTGTCTTCTATTGATCGAAGCCGTT 465 485 27 Antisense
TCGAAGCCGTTGGTGCTCGAGTTGC 334 601 41 Antisense
TTGCTCCAGCTTCAGTTGTTCTAGC 273 703 62 Antisense
AGCTTCAGTTGTTCTAGCTCCAGTT 463 79 69 Antisense
TCCAGTTGATTCTGAAGGGCAACAT 430 589 87 Antisense
GAAGGGCAACATTGCGGTATCGTTG 436 335 100 Antisense
TGCGGTATCGTTGAATGCCGTCCGG 311 579 112 Antisense
GTTGAATGCCGTCCGGGTTACGACT 347 415 121 Antisense
TCCGGGTTACGACTGCGTCGGTGGA 375 585 132 Antisense
GTTACGACTGCGTCGGTGGAAAATG 185 423 137 Antisense
Sequence Source Affymetrix Proprietary Database