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[183353_at]

Description C24H11.6 /REP_DB=WormBase Gene ID /WP=CE18529 /TR=Q9XVD2 /GB=CAB03913.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 71      4grp_total > 59      6grp_cgc > 84      6grp_cgc_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 289
1 2 3 4 range
A 194.3
(0.6)
A 		309.9
(3)
A 		270.9
(2.2)
A 		21.2
(-3)
A 		289
B 222.4
(2.1)
A 		245.8
(2.8)
A 		251.2
(3)
A 		64.7
(-3)
A 		187
C 180.8
(0.9)
A 		216
(2.4)
A 		229
(3)
A 		91.4
(-3)
A 		138
avr 199.2
(1.2) 		257.2
(3) 		250.4
(2.8) 		59.1
(-3) 		198

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 106
1 2 3 4 5 6 range
A 192.3
(-1.4)
A 		209.3
(-0.4)
A 		208.8
(-0.4)
A 		269.6
(3)
M 		177.1
(-2.2)
A 		163.8
(-3)
A 		106
B 169.1
(-3)
A 		193.1
(2.3)
A 		177.6
(-1.1)
A 		196.3
(3)
A 		189.1
(1.4)
A 		184.4
(0.4)
A 		27
C 186
(-2.1)
A 		173.3
(-3)
A 		259.9
(3)
A 		225.1
(0.6)
A 		219.4
(0.2)
A 		182.9
(-2.3)
A 		87
avr 182.5
(-2.4) 		191.9
(-1.3) 		215.4
(1.3) 		230.3
(3) 		195.2
(-1) 		177
(-3) 		53
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 70.7
(3)
A 		67.3
(2.7)
A 		70.8
(3)
A 		3.1
(-3)
A 		68
B 70.9
(3)
A 		60.7
(1.9)
A 		58.2
(1.7)
A 		13.8
(-3)
A 		57
C 59.8
(1.1)
A 		62.1
(1.4)
A 		79.8
(3)
A 		15.4
(-3)
A 		64
avr 67.1
(2.7) 		63.4
(2.4) 		69.6
(3) 		10.8
(-3) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 35.4
(-3)
A 		74.4
(3)
A 		45.5
(-1.4)
A 		68.4
(2.1)
M 		53.4
(-0.2)
A 		39.9
(-2.3)
A 		39
B 58.9
(-0.2)
A 		64.3
(0.8)
A 		43.1
(-3)
A 		52
(-1.4)
A 		76.8
(3)
A 		68.7
(1.6)
A 		34
C 69
(2.5)
A 		52.9
(-1.2)
A 		66.1
(1.9)
A 		45.3
(-3)
A 		71
(3)
A 		61.2
(0.7)
A 		26
avr 54.4
(-1.9) 		63.9
(1.8) 		51.6
(-3) 		55.2
(-1.6) 		67.1
(3) 		56.6
(-1.1) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183353_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6766
Sequence Type Exemplar sequence
Representative Public ID C24H11.6 NCBI
Target Description C24H11.6 /REP_DB=WormBase Gene ID /WP=CE18529 /TR=Q9XVD2 /GB=CAB03913.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026013
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000008943 ENSEMBL cdna:SNAP chromosome:CEL140:III:11774939:11780851:1 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_067122 5/11 Cross Hyb Matching Probes None
NM_001026013 6/11 Cross Hyb Matching Probes None
GENEFINDER00000008949 5/11 Cross Hyb Matching Probes None
GENEFINDER00000008950 5/11 Cross Hyb Matching Probes None
C24H11.6 5/11 Cross Hyb Matching Probes None
C24H11.9 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:11774987-11778941(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03913 Hypothetical protein C24H11.6 [Caenorhabditis elegans] ref|NP_499523.2| MeDiaTor family member (mdt-21) [Caenorhabditis elegans] 9.0E-71
blast CAE67660 Hypothetical protein CBG13223 [Caenorhabditis briggsae] 2.0E-67
blast CAE67659 Hypothetical protein CBG13222 [Caenorhabditis briggsae] 3.0E-50
Protein Domains
Database ID Description E-Value
Pfam IPR000508 EMBL-EBI Peptidase S26, signal peptidase I 2.9E-4
Sequence
Target Sequence 
>C. ELEGANS:183353_AT
ccatttgcttccatctggcagagttccaattggtcacgtattccttcgcggtgacaacgg
cccagtttcaacagattccagacatttcggcccggtacctgaagcccttgttcagataag
gctcagcctgagaatatggcctccagagagagccggatggatttctgatcattggttttg
ggataaaacccaaaaactcttgaaaatggctgatcgaatgacccaactacaggatatgat
taacgaaatggccggattaatgacaaatgcgattggagtgctccaggcgactgctccgcc
atgtgaatttggagcaatttcacaggagcttgaggatgagccaaattgcgcgatttttgc
cgctggaattgcaaaagccgctaaaaatattgagatcctcatcgactcattcccaatcga
agcgggcaaccaggaagcggaagtcgaggagaaaatgataaaaaacgacgaaaagcagcg
agaaaaagtgaatgagctcgtcggactcgtcggcgacagcaatcggctcgtcggagttgt
tca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCATTTGCTTCCATCTGGCAGAGTT 41 271 201 Antisense
TTCCAATTGGTCACGTATTCCTTCG 536 699 224 Antisense
TGACAACGGCCCAGTTTCAACAGAT 231 571 252 Antisense
AACAGATTCCAGACATTTCGGCCCG 634 135 270 Antisense
ATGGCCTCCAGAGAGAGCCGGATGG 390 53 336 Antisense
GACTGCTCCGCCATGTGAATTTGGA 232 375 489 Antisense
AATTGCGCGATTTTTGCCGCTGGAA 521 177 544 Antisense
ATTGAGATCCTCATCGACTCATTCC 536 5 589 Antisense
GACTCATTCCCAATCGAAGCGGGCA 226 373 604 Antisense
TCGGACTCGTCGGCGACAGCAATCG 613 605 701 Antisense
GCAATCGGCTCGTCGGAGTTGTTCA 54 323 719 Antisense
Sequence Source Affymetrix Proprietary Database