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[183352_at]

Description C43H8.2 /REP_DB=WormBase Gene ID /WP=CE19378 /TR=Q9TZN2 /GB=AAC67397.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 66      6grp_high1_10_10 > 76      4grp_highest_8_8 > 54      4grp_high_8_8 > 10      6grp_highest_nonorm > 74      6grp_total > 66      4grp_total > 22      6grp_highest_sub > Da      6grp_high1_sub > Da      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 368
1 2 3 4 range
A 903.1
(3)
P 		630.3
(-2.7)
P 		614.7
(-3)
P 		821.6
(1.3)
P 		288
B 775.9
(2.7)
P 		688.7
(0.6)
P 		535.3
(-3)
P 		789.1
(3)
P 		254
C 715.6
(0.6)
P 		630.4
(-2.7)
P 		623
(-3)
P 		777.1
(3)
P 		154
avr 798.2
(3) 		649.8
(-1.3) 		591
(-3) 		795.9
(2.9) 		207

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 490
1 2 3 4 5 6 range
A 756.9
(3)
P 		624.6
(-2.3)
P 		620.2
(-2.5)
P 		641.9
(-1.6)
P 		723.4
(1.6)
P 		608.4
(-3)
P 		149
B 738.9
(-1.6)
P 		699.5
(-3)
P 		864.4
(3)
P 		751.2
(-1.1)
P 		721.1
(-2.2)
P 		827.1
(1.6)
P 		165
C 443.1
(-3)
P 		705.3
(0.2)
P 		588.1
(-1.2)
P 		629
(-0.7)
P 		518.9
(-2.1)
P 		932.7
(3)
P 		490
avr 646.3
(-3) 		676.5
(-1.7) 		690.9
(-1.1) 		674
(-1.8) 		654.5
(-2.7) 		789.4
(3) 		143
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 209
1 2 3 4 range
A 328.8
(3)
P 		136.8
(-2.5)
P 		160.7
(-1.8)
P 		120.3
(-3)
P 		209
B 247.4
(3)
P 		170.1
(-0.8)
P 		124
(-3)
P 		168.2
(-0.9)
P 		123
C 236.9
(3)
P 		181.3
(-0.2)
P 		217.1
(1.9)
P 		131
(-3)
P 		106
avr 271
(3) 		162.7
(-2) 		167.3
(-1.7) 		139.8
(-3) 		131

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 186
1 2 3 4 5 6 range
A 139.5
(-2.7)
P 		222.2
(3)
P 		135.1
(-3)
P 		162.8
(-1.1)
P 		218.3
(2.7)
P 		148.1
(-2.1)
P 		87
B 257.1
(0.2)
P 		232.8
(-1.1)
P 		209.9
(-2.4)
P 		199
(-3)
P 		293
(2.2)
P 		308.4
(3)
P 		109
C 164.3
(-1.8)
P 		215.2
(-0.1)
P 		149.7
(-2.3)
P 		126.5
(-3)
P 		167.9
(-1.7)
P 		312.2
(3)
P 		186
avr 187
(-1.4) 		223.4
(0.9) 		164.9
(-2.9) 		162.8
(-3) 		226.4
(1.1) 		256.2
(3) 		93
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183352_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2314
Sequence Type Exemplar sequence
Representative Public ID C43H8.2 NCBI
Target Description C43H8.2 /REP_DB=WormBase Gene ID /WP=CE19378 /TR=Q9TZN2 /GB=AAC67397.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060376(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060376 NCBI Caenorhabditis elegans C43H8.2 (C43H8.2) mRNA, complete cds. 11/11 None
SNAP00000019933 ENSEMBL cdna:SNAP chromosome:CEL140:I:10631299:10632186:1 11/11 None
GENEFINDER00000019939 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10631323:10632186:1 11/11 None
C43H8.2 ENSEMBL cdna:known chromosome:CEL140:I:10631299:10632482:1 gene:C43H8.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10631229-10632117(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C43H8.2
Entrez Gene 172953 Entrez gene
SwissProt Q9TZN2 EMBL-EBI
WormBase CE19378 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:250281_AT expressed protein at
CANINE_2:CFA.17967.1.S1_S_AT similar to MAF1 protein cfa
CANINE_2:CFAAFFX.3199.1.S1_AT similar to MAF1 protein cfa
HG-U133_PLUS_2:222998_AT MAF1 homolog (S. cerevisiae) hs
HG-U133B:222998_AT MAF1 homolog (S. cerevisiae) hs
HU35KSUBA:AA482407_S_AT MAF1 homolog (S. cerevisiae) hs
U133_X3P:G12053368_3P_AT MAF1 homolog (S. cerevisiae) hs
HG-U95B:57059_AT MAF1 homolog (S. cerevisiae) hs
MOE430A:1420046_S_AT MAF1 homolog (S. cerevisiae) mm
MOUSE430A_2:1420046_S_AT MAF1 homolog (S. cerevisiae) mm
MOUSE430_2:1420046_S_AT MAF1 homolog (S. cerevisiae) mm
MG-U74AV2:93490_AT MAF1 homolog (S. cerevisiae) mm
MG-U74BV2:164490_R_AT MAF1 homolog (S. cerevisiae) mm
MOE430A:1451126_AT MAF1 homolog (S. cerevisiae) mm
MOUSE430A_2:1451126_AT MAF1 homolog (S. cerevisiae) mm
MOUSE430_2:1451126_AT MAF1 homolog (S. cerevisiae) mm
MOE430A:1420047_AT MAF1 homolog (S. cerevisiae) (Maf1), mRNA mm
MOUSE430A_2:1420047_AT MAF1 homolog (S. cerevisiae) (Maf1), mRNA mm
MOUSE430_2:1420047_AT MAF1 homolog (S. cerevisiae) (Maf1), mRNA mm
MU19KSUBA:TC18783_AT MAF1 homolog (S. cerevisiae) (Maf1), mRNA mm
MU19KSUBA:TC18783_G_AT MAF1 homolog (S. cerevisiae) (Maf1), mRNA mm
MU19KSUBB:TC34083_AT MAF1 homolog (S. cerevisiae) (Maf1), mRNA mm
MU19KSUBB:TC34083_G_AT MAF1 homolog (S. cerevisiae) (Maf1), mRNA mm
MU19KSUBC:TC39739_S_AT MAF1 homolog (S. cerevisiae) (Maf1), mRNA mm
RG-U34C:RC_AA817806_AT similar to homolog of yeast MAF1 rn
RAE230A:1371374_AT similar to homolog of yeast MAF1 rn
RAT230_2:1371374_AT similar to homolog of yeast MAF1 rn
Protein Similarities
Method ID Description E-Value
blast AAC67397 Hypothetical protein C43H8.2 [Caenorhabditis elegans] ref|NP_492777.1| C43H8.2 [Caenorhabditis elegans] 1.0E-140
blast AAC67397 Hypothetical protein C43H8.2 [Caenorhabditis elegans] ref|NP_492777.1| C43H8.2 [Caenorhabditis elegans] 1.0E-136
blast XP_624527 PREDICTED: similar to ENSANGP00000019317 [Apis mellifera] 1.0E-23
blast XP_857738 PREDICTED: similar to MAF1 protein isoform 2 [Canis familiaris] ref|XP_539208.2| PREDICTED: similar to MAF1 protein isoform 1 [Canis familiaris] 6.0E-22
Sequence
Target Sequence 
>C. ELEGANS:183352_AT
tgatatggggtgaacgccagcctctaggatcttacgaggaaatggtgatgagtgcatcgc
ccagtgttggtcacaatcatcggcttcgccatttatcggaacgctcgtgctcaggaggat
cagacaacgatttcgacgtgaatgactacctgataaaagactcaatttcgcgaaagaaat
tgtatgatctgactcaagttctgaactgttcgtttccggatcacgatttcagtaatgcca
acagtgaagcgtttgctctcgtcaattattcggacctgagccgtctcgttgatatgaagc
ttgagacaattgtcagagactatcacgtgagaagagaagagctatggggaattattgatg
aggcaattgtgcccggtgactgtcaaatatacagcttcaagtcccaattcgaagacgatc
cgtttaccgaagacggttgcatttgggcacttgccttcattttctacaacaaaggactca
aacgttttgttcttctcacaattcgttgcctatcgaaacaagccgacacgtccatcgaaa
tt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGATATGGGGTGAACGCCAGCCTCT 507 563 164 Antisense
CATCGCCCAGTGTTGGTCACAATCA 571 209 218 Antisense
ATCATCGGCTTCGCCATTTATCGGA 61 27 239 Antisense
GAACGCTCGTGCTCAGGAGGATCAG 7 347 262 Antisense
TTCTGAACTGTTCGTTTCCGGATCA 309 693 362 Antisense
AAGCGTTTGCTCTCGTCAATTATTC 667 149 410 Antisense
AATTATTCGGACCTGAGCCGTCTCG 682 173 427 Antisense
AATTGTGCCCGGTGACTGTCAAATA 497 177 528 Antisense
AGACGGTTGCATTTGGGCACTTGCC 102 71 594 Antisense
CACTTGCCTTCATTTTCTACAACAA 313 197 611 Antisense
ACAAGCCGACACGTCCATCGAAATT 53 113 681 Antisense
Sequence Source Affymetrix Proprietary Database