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[183351_at]

Description F59B1.5 /REP_DB=WormBase Gene ID /WP=CE17946 /TR=O61877 /GB=AAC17665.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 47      4grp_total > 28      6grp_cgc > 27      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 17.3
(-1.9)
A 		64.5
(3)
A 		6.7
(-3)
A 		13.9
(-2.3)
A 		58
B 20.1
(-1.6)
A 		32.5
(-0.1)
A 		9
(-3)
A 		57.1
(3)
A 		48
C 42.7
(1.4)
A 		8.7
(-3)
A 		12.3
(-2.5)
A 		55.5
(3)
P 		47
avr 26.7
(0.2) 		35.2
(1.7) 		9.3
(-3) 		42.2
(3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 24.5
(0.3)
A 		5.9
(-2.5)
A 		20.7
(-0.2)
A 		2.8
(-3)
A 		7.4
(-2.3)
A 		41.7
(3)
A 		39
B 46.7
(1.4)
A 		54.9
(3)
A 		35.6
(-0.8)
A 		36.8
(-0.5)
A 		36.4
(-0.6)
A 		24.1
(-3)
A 		31
C 6.4
(-2.3)
A 		10.8
(-1.4)
A 		7.3
(-2.1)
A 		6.5
(-2.2)
A 		2.7
(-3)
A 		32.8
(3)
A 		30
avr 25.9
(0.6) 		23.9
(-0.1) 		21.2
(-1) 		15.4
(-3) 		15.5
(-3) 		32.9
(3) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 6.3
(-0.8)
A 		14
(3)
A 		1.7
(-3)
A 		2
(-2.9)
A 		12
B 6.4
(-0.4)
A 		8
(0.5)
A 		2.1
(-3)
A 		12.2
(3)
A 		10
C 14.1
(3)
A 		2.5
(-3)
A 		4.3
(-2.1)
A 		9.4
(0.6)
P 		12
avr 8.9
(3) 		8.2
(2.3) 		2.7
(-3) 		7.9
(2) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 4.5
(-0.6)
A 		2.1
(-2.1)
A 		4.5
(-0.6)
A 		0.7
(-3)
A 		2.2
(-2.1)
A 		10.2
(3)
A 		10
B 16.2
(1.7)
A 		18.3
(3)
A 		8.6
(-3)
A 		9.8
(-2.3)
A 		14.8
(0.8)
A 		9
(-2.8)
A 		10
C 2.4
(-2.1)
A 		3.3
(-1.6)
A 		1.9
(-2.4)
A 		1.3
(-2.8)
A 		0.9
(-3)
A 		11
(3)
A 		10
avr 7.7
(0.7) 		7.9
(0.9) 		5
(-1.9) 		3.9
(-3) 		6
(-1) 		10.1
(3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183351_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14795
Sequence Type Exemplar sequence
Representative Public ID F59B1.5 NCBI
Target Description F59B1.5 /REP_DB=WormBase Gene ID /WP=CE17946 /TR=O61877 /GB=AAC17665.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000030022 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3622199:3623513:-1 10/11 None
F59B1.5 ENSEMBL cdna:known chromosome:CEL140:V:3622199:3623513:-1 gene:F59B1.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_071615 1/11 Cross Hyb Matching Probes None
GENEFINDER00000030030 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3622198-3623513(-) 100.0 100.0
Public Domain and Genome References
Ensembl F59B1.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast B89007 protein F59B1.5 [imported] - Caenorhabditis elegans 1.0E-136
blast AAC17662 Serpentine receptor, class x protein 93 [Caenorhabditis elegans] ref|NP_504016.2| Serpentine Receptor, class X family member (srx-93) [Caenorhabditis elegans] 1.0E-127
blast B89007 protein F59B1.5 [imported] - Caenorhabditis elegans 1.0E-123
blast CAA18353 Hypothetical protein H12C20.5 [Caenorhabditis elegans] ref|NP_505938.1| Serpentine Receptor, class X family member (srx-90) [Caenorhabditis elegans] 1.0E-105
blast AAC17662 Serpentine receptor, class x protein 93 [Caenorhabditis elegans] ref|NP_504016.2| Serpentine Receptor, class X family member (srx-93) [Caenorhabditis elegans] 3.0E-95
blast CAA18353 Hypothetical protein H12C20.5 [Caenorhabditis elegans] ref|NP_505938.1| Serpentine Receptor, class X family member (srx-90) [Caenorhabditis elegans] 3.0E-81
Protein Domains
Database ID Description E-Value
Pfam IPR003845 EMBL-EBI Protein of unknown function DUF216 1.4E-65
Pfam IPR003845 EMBL-EBI Protein of unknown function DUF216 6.6E-86
Trans Membrane
ID Number Of Domains Domain Boundaries
F59B1.5 5 15-37,50-72,121-140,185-207,217-234
GENEFINDER00000030022 4 15-37,50-72,121-140,186-208
Sequence
Target Sequence 
>C. ELEGANS:183351_AT
tgatcacttatctaccacaagctttattagggtattctccatacccaccagcaatcgaat
cttggttcatcaatacatcaaaccctttatatcttggaaatgagcatcaaatagttttaa
tcgcaatgaacagattttgtgcaatgtttttcccaacaaaatattcgcgaatattttcat
tatttcatacaacaatcatacttgttctaatctatctctctagaatcgcacaggaaatat
atgaatggttgccatggtccgcaaaaggttgctataaattattctcgacagaagattttg
ttgtgaagtacatcagtgctcccgattgtgactgggtggataatgctccaaaaataatta
agtatacgtttatagcaactgcaattttgaattttatcacttttttgaagatcttgcatt
tttacaagtttctggagcactacccgtttgtggacatatttttattcattatgataattt
tcaatgaaaagctggcatttcttaaaactaaaattaaaaagaaaatagtgctcccaataa
ttggtggtggccatcctcgacaaggccagacatcagtcacaacatattcttat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGATCACTTATCTACCACAAGCTTT 189 565 212 Antisense
CTATCTCTCTAGAATCGCACAGGAA 313 225 423 Antisense
GGTTGCTATAAATTATTCTCGACAG 514 507 478 Antisense
TGTGAAGTACATCAGTGCTCCCGAT 247 557 513 Antisense
GTGCTCCCGATTGTGACTGGGTGGA 679 477 527 Antisense
TACAAGTTTCTGGAGCACTACCCGT 314 641 634 Antisense
GAGCACTACCCGTTTGTGGACATAT 499 389 646 Antisense
GAAAATAGTGCTCCCAATAATTGGT 457 351 732 Antisense
AATAATTGGTGGTGGCCATCCTCGA 670 169 747 Antisense
CATCCTCGACAAGGCCAGACATCAG 393 211 763 Antisense
GACATCAGTCACAACATATTCTTAT 611 369 780 Antisense
Sequence Source Affymetrix Proprietary Database