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[183349_s_at]

Description K05B2.2 /REP_DB=WormBase Gene ID /WP=CE25929 /TR=Q9GYN5 /GB=AAF99982.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 68      4grp_highest_8_8 > 31      4grp_high_8_8 > 12      6grp_total > 69      4grp_total > 12      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 367
1 2 3 4 range
A 388.7
(-1.1)
P 		316.7
(-2.3)
P 		275.5
(-3)
P 		633.8
(3)
P 		358
B 342.9
(-1.6)
P 		326.8
(-1.9)
P 		266.4
(-3)
P 		583.1
(3)
P 		317
C 384.2
(-0.7)
P 		354.4
(-1.3)
P 		271
(-3)
P 		564.3
(3)
P 		293
avr 371.9
(-1.1) 		332.6
(-1.9) 		271
(-3) 		593.7
(3) 		323

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 250
1 2 3 4 5 6 range
A 325.8
(-1)
M 		297.5
(-1.8)
P 		254.2
(-3)
P 		274.6
(-2.4)
P 		317
(-1.3)
P 		470.4
(3)
P 		216
B 353.6
(0.1)
P 		321.7
(-1.5)
P 		294.1
(-3)
P 		301.5
(-2.6)
P 		328.7
(-1.2)
P 		407.9
(3)
P 		114
C 320.5
(-2.6)
P 		380.2
(-0.8)
P 		306.6
(-3)
P 		311.1
(-2.9)
P 		306.5
(-3)
P 		504.6
(3)
P 		198
avr 333.3
(-1.4) 		333.1
(-1.4) 		285
(-3) 		295.7
(-2.6) 		317.4
(-1.9) 		461
(3) 		176
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 141.5
(3)
P 		68.7
(-3)
P 		72
(-2.7)
P 		92.8
(-1)
P 		73
B 109.4
(1.6)
P 		80.7
(-1.2)
P 		61.7
(-3)
P 		124.3
(3)
P 		63
C 127.2
(3)
P 		101.9
(-1.6)
P 		94.4
(-3)
P 		95.1
(-2.9)
P 		33
avr 126
(3) 		83.8
(-2.1) 		76
(-3) 		104.1
(0.4) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 114
1 2 3 4 5 6 range
A 60.1
(-2.5)
M 		105.8
(2.1)
P 		55.3
(-3)
P 		69.7
(-1.5)
P 		95.7
(1.1)
P 		114.5
(3)
P 		59
B 123
(0.8)
P 		107.1
(-0.3)
P 		71.4
(-3)
P 		79.9
(-2.4)
P 		133.5
(1.6)
P 		152.1
(3)
P 		81
C 118.8
(0.2)
P 		116
(0)
P 		78
(-2.1)
P 		62.6
(-3)
P 		99.2
(-0.9)
P 		168.9
(3)
P 		106
avr 100.6
(-0.5) 		109.6
(0.2) 		68.2
(-3) 		70.7
(-2.8) 		109.5
(0.2) 		145.2
(3) 		77
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183349_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16794
Sequence Type Exemplar sequence
Representative Public ID K05B2.2 NCBI
Target Description K05B2.2 /REP_DB=WormBase Gene ID /WP=CE25929 /TR=Q9GYN5 /GB=AAF99982.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076434(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076434 NCBI Caenorhabditis elegans K05B2.2 (K05B2.2) mRNA, complete cds. 11/11 None
GENEFINDER00000040755 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:4907260:4911952:1 11/11 None
K05B2.2 ENSEMBL cdna:known chromosome:CEL140:X:4907258:4912272:1 gene:K05B2.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000040750 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4907260-4911953(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K05B2.2
Entrez Gene 180764 Entrez gene
SwissProt Q9GYN5 EMBL-EBI
WormBase CE29427 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF99982 Hypothetical protein K05B2.2a [Caenorhabditis elegans] ref|NP_508835.1| K05B2.2 [Caenorhabditis elegans] 1.0E-159
blast CAE68664 Hypothetical protein CBG14565 [Caenorhabditis briggsae] 1.0E-127
blast T16560 hypothetical protein K05B2.2 - Caenorhabditis elegans 9.0E-86
Sequence
Target Sequence 
>C. ELEGANS:183349_S_AT
gtagtatggtcacttcgttaccaggaagaagtgcggcgggccagcagcagcttgaaaatg
gacaaagaagcactagttcgttgccaacttacgcctcggcaggtggtgtcactggcactc
tcggacgcaacacccgtcggcctccgccaccagactacatgtcagtcatggagaaaaaga
atatcacgatgggcgccgccactatcccacagaaagacgattttgattgtttcaaaagag
ccgacgtgaaaaagttgtcggaaacgatgaatcaacaagaagtcgccgagtatcttgtgc
aggaggaagagcttcgtcaactgcttaagcaacagaaaaatttgcgagcaattctgaagc
cgatgatcgctgcaaactggccgcaacaataccaacttgagctcaagaaatcgcacaagc
tgaaggcttcgctagcagctacaaaagaagcaatcaacaagactagaagtgacatcttgc
gcgtcgaagaaaccgaaaaagacttgatgaagaagttggccgagttcaagaagcaagatg
agaatggagatgagaattcagaagtcttggagacatctttcgacttgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTAGTATGGTCACTTCGTTACCAGG 682 453 356 Antisense
GCGGGCCAGCAGCAGCTTGAAAATG 544 289 391 Antisense
GCACTAGTTCGTTGCCAACTTACGC 262 281 425 Antisense
AACTTACGCCTCGGCAGGTGGTGTC 459 121 441 Antisense
AAGTCGCCGAGTATCTTGTGCAGGA 698 157 635 Antisense
GGAAGAGCTTCGTCAACTGCTTAAG 561 529 660 Antisense
GCCGATGATCGCTGCAAACTGGCCG 487 283 714 Antisense
AACTGGCCGCAACAATACCAACTTG 276 139 730 Antisense
TGAAGGCTTCGCTAGCAGCTACAAA 368 575 776 Antisense
GACATCTTGCGCGTCGAAGAAACCG 659 369 826 Antisense
GTCTTGGAGACATCTTTCGACTTGG 287 467 919 Antisense
Sequence Source Affymetrix Proprietary Database