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[183348_at]

Description F35C12.3 /REP_DB=WormBase Gene ID /WP=CE09915 /TR=Q9XVP4 /GB=CAB03048.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 05      6grp_high1_10_10 > 21      4grp_highest_8_8 > 56      4grp_high_8_8 > 35      6grp_highest_nonorm > 52      6grp_total > 32      4grp_total > 37      6grp_highest_sub > 03_04      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 242
1 2 3 4 range
A 613.7
(1.6)
P 		640.1
(3)
P 		525.6
(-3)
P 		539
(-2.3)
P 		115
B 732.9
(3)
P 		713.5
(2.5)
P 		490.8
(-3)
P 		611.2
(-0)
P 		242
C 696.4
(3)
P 		656.3
(-0.4)
P 		624.6
(-3)
P 		641.4
(-1.6)
P 		72
avr 681
(3) 		670
(2.5) 		547
(-3) 		597.2
(-0.8) 		134

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 739
1 2 3 4 5 6 range
A 644.7
(0.1)
P 		644.4
(0.1)
P 		1006.2
(3)
P 		662.4
(0.2)
P 		389.6
(-2)
P 		266.8
(-3)
P 		739
B 741.6
(1.4)
P 		761.6
(1.6)
P 		868.6
(3)
P 		772.7
(1.8)
P 		406.2
(-2.9)
P 		395.5
(-3)
P 		473
C 700.3
(2.7)
P 		663.3
(2.2)
P 		602.7
(1.3)
P 		718.3
(3)
P 		358.5
(-2.2)
P 		305.9
(-3)
P 		412
avr 695.5
(1.4) 		689.8
(1.4) 		825.8
(3) 		717.8
(1.7) 		384.8
(-2.3) 		322.7
(-3) 		503
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 155
1 2 3 4 range
A 223.5
(3)
P 		139
(-0.5)
P 		137.4
(-0.6)
P 		78.9
(-3)
P 		145
B 233.7
(3)
P 		176.2
(0.1)
P 		113.7
(-3)
P 		130.3
(-2.2)
P 		120
C 230.5
(3)
P 		188.7
(0.9)
P 		217.7
(2.4)
P 		108.2
(-3)
P 		122
avr 229.2
(3) 		168
(0) 		156.3
(-0.5) 		105.8
(-3) 		123

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 195
1 2 3 4 5 6 range
A 118.8
(-1)
P 		229.2
(3)
P 		219.1
(2.6)
P 		168
(0.8)
P 		117.6
(-1.1)
P 		64.9
(-3)
P 		164
B 258
(3)
P 		253.5
(2.8)
P 		210.9
(0.4)
P 		204.7
(0.1)
P 		165
(-2)
P 		147.5
(-3)
P 		111
C 259.6
(3)
P 		202.4
(0.8)
P 		153.4
(-1.1)
P 		144.4
(-1.4)
P 		116
(-2.5)
P 		102.4
(-3)
P 		157
avr 212.1
(2.2) 		228.4
(3) 		194.5
(1.4) 		172.4
(0.3) 		132.9
(-1.6) 		104.9
(-3) 		124
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183348_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1242
Sequence Type Exemplar sequence
Representative Public ID F35C12.3 NCBI
Target Description F35C12.3 /REP_DB=WormBase Gene ID /WP=CE09915 /TR=Q9XVP4 /GB=CAB03048.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026279(9), NM_001026277(11), NM_001026278(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026279 NCBI Caenorhabditis elegans F35C12.3c (F35C12.3) mRNA, complete cds. 9/11 None
NM_001026277 NCBI Caenorhabditis elegans F35C12.3a (F35C12.3) mRNA, complete cds. 11/11 None
NM_001026278 NCBI Caenorhabditis elegans F35C12.3b (F35C12.3) mRNA, complete cds. 9/11 None
F35C12.3 ENSEMBL cdna:known chromosome:CEL140:I:9821084:9823488:-1 gene:F35C12.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000022598 8/11 Cross Hyb Matching Probes None
GENEFINDER00000022603 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9821147-9823419(-) 100.0 100.0
Public Domain and Genome References
Ensembl F35C12.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAI79229 Hypothetical protein F35C12.3c [Caenorhabditis elegans] emb|CAI79264.1| Hypothetical protein F35C12.3c [Caenorhabditis elegans] ref|NP_001021450.1| F35C12.3c [Caenorhabditis elegans] 0.0
blast CAB03048 Hypothetical protein F35C12.3a [Caenorhabditis elegans] ref|NP_001021448.1| F35C12.3a [Caenorhabditis elegans] 0.0
blast CAB03048 Hypothetical protein F35C12.3a [Caenorhabditis elegans] ref|NP_001021448.1| F35C12.3a [Caenorhabditis elegans] 1.0E-110
blast CAI79229 Hypothetical protein F35C12.3c [Caenorhabditis elegans] emb|CAI79264.1| Hypothetical protein F35C12.3c [Caenorhabditis elegans] ref|NP_001021450.1| F35C12.3c [Caenorhabditis elegans] 1.0E-110
blast CAI79228 Hypothetical protein F35C12.3b [Caenorhabditis elegans] ref|NP_001021449.1| F35C12.3b [Caenorhabditis elegans] 1.0E-109
blast CAB03048 Hypothetical protein F35C12.3a [Caenorhabditis elegans] ref|NP_001021448.1| F35C12.3a [Caenorhabditis elegans] 1.0E-109
blast CAI79229 Hypothetical protein F35C12.3c [Caenorhabditis elegans] emb|CAI79264.1| Hypothetical protein F35C12.3c [Caenorhabditis elegans] ref|NP_001021450.1| F35C12.3c [Caenorhabditis elegans] 1.0E-109
blast CAI79228 Hypothetical protein F35C12.3b [Caenorhabditis elegans] ref|NP_001021449.1| F35C12.3b [Caenorhabditis elegans] 1.0E-108
Sequence
Target Sequence 
>C. ELEGANS:183348_AT
caaatccaacacttgtcggttcctctttttttaattggtgttttcagatgcttcgcttat
ttgtttcacttttggtaattgtttctggaacatttgcaattcaatgtaatacgggtctaa
aattcatcaaaggaacatcggttggaactgcaacaatcaattgtgaaaattctggtgcat
attgttataatatgactgcatcagctgcttcattaattgaagttaccaaagcgggatgca
gtatgtggagatgcatgttcgctcaaaacaaatgtattggaaccacattccaaaatattc
caatttcattgtgttgttgtaacactccattgtgcaatgctggtggagaaggagctattc
aatcccaaaattctggtggatggaatgcggagcccgagcatcgggtcacaaatttgaata
aagacgaagttcaaagcagatttgattctgcggaacttgatgaagatcatccacatggaa
gttcctcgagagctgctcgttccggcaaaccagataccactgatccaacaactgtagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAATCCAACACTTGTCGGTTCCTC 301 193 494 Antisense
ATTGGTGTTTTCAGATGCTTCGCTT 120 5 527 Antisense
GATGCTTCGCTTATTTGTTTCACTT 128 413 540 Antisense
ATATGACTGCATCAGCTGCTTCATT 407 21 683 Antisense
GTATGTGGAGATGCATGTTCGCTCA 248 455 734 Antisense
GTTGTAACACTCCATTGTGCAATGC 703 437 809 Antisense
TGGTGGATGGAATGCGGAGCCCGAG 440 553 867 Antisense
GGAGCCCGAGCATCGGGTCACAAAT 607 519 882 Antisense
GAAGTTCCTCGAGAGCTGCTCGTTC 120 337 971 Antisense
GTTCCGGCAAACCAGATACCACTGA 516 441 992 Antisense
ATACCACTGATCCAACAACTGTAGC 501 21 1007 Antisense
Sequence Source Affymetrix Proprietary Database