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[183347_at] 7TM chemoreceptor, srab family

Description C04F5.4 /REP_DB=WormBase Gene ID /WP=CE19668 /TR=Q9GZD4 /GB=AAF98595.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 10      6grp_cgc > 88      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 4.7
(-3)
A 		6.6
(-1.6)
A 		7.1
(-1.2)
A 		12.6
(3)
A 		8
B 17.2
(-0.1)
A 		4.1
(-3)
A 		7.8
(-2.2)
A 		31
(3)
A 		27
C 6
(-3)
A 		27.8
(2.2)
A 		15.9
(-0.6)
A 		31.2
(3)
A 		25
avr 9.3
(-3) 		12.8
(-1.7) 		10.3
(-2.6) 		24.9
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 19.7
(3)
A 		18.3
(2.4)
A 		8.4
(-1.6)
A 		5
(-3)
A 		5.8
(-2.7)
A 		19
(2.7)
A 		15
B 2.5
(-3)
A 		3.1
(-2.9)
A 		4.4
(-2.6)
A 		6.2
(-2.2)
A 		28.8
(3)
A 		4
(-2.7)
A 		26
C 2.8
(-3)
A 		4.5
(-2.5)
A 		5
(-2.4)
A 		24.6
(3)
A 		16.6
(0.8)
A 		2.8
(-3)
A 		22
avr 8.3
(-1.7) 		8.6
(-1.6) 		5.9
(-3) 		11.9
(0.2) 		17.1
(3) 		8.6
(-1.6) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 1.7
(1.5)
A 		1.4
(-3)
A 		1.8
(3)
A 		1.8
(3)
A 		0
B 5.5
(1.8)
A 		1
(-3)
A 		1.8
(-2.1)
A 		6.6
(3)
A 		6
C 2
(-3)
A 		8
(3)
A 		5.5
(0.5)
A 		5.3
(0.3)
A 		6
avr 3.1
(-2.6) 		3.5
(-1.1) 		3
(-3) 		4.6
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 3.6
(-0.3)
A 		6.5
(3)
A 		1.8
(-2.4)
A 		1.3
(-3)
A 		1.8
(-2.4)
A 		4.6
(0.8)
A 		5
B 0.9
(-3)
A 		1
(-2.9)
A 		1.1
(-2.9)
A 		1.6
(-2.6)
A 		11.7
(3)
A 		1.5
(-2.7)
A 		11
C 1
(-2.9)
A 		1.4
(-2.3)
A 		1.3
(-2.5)
A 		4.9
(2.3)
A 		5.4
(3)
A 		0.9
(-3)
A 		5
avr 1.8
(-2.5) 		3
(-1) 		1.4
(-3) 		2.6
(-1.5) 		6.3
(3) 		2.3
(-1.9) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183347_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15087
Sequence Type Exemplar sequence
Representative Public ID C04F5.4 NCBI
Target Description C04F5.4 /REP_DB=WormBase Gene ID /WP=CE19668 /TR=Q9GZD4 /GB=AAF98595.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071965(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071965 NCBI Caenorhabditis elegans Serpentine Receptor, class AB (class A-like) family member (srab-1) (srab-1) mRNA, complete cds. 11/11 None
GENEFINDER00000034414 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5097177:5110579:-1 11/11 None
C04F5.4 ENSEMBL cdna:known chromosome:CEL140:V:5099911:5101930:-1 gene:C04F5.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000034403 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5099910-5101930(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srab family
Gene Symbol srab-1
Ensembl C04F5.4
Entrez Gene 182220 Entrez gene
SwissProt Q9GZD4 EMBL-EBI
WormBase CE19668 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF98595 Serpentine receptor, class ab (class a-like) protein 1 [Caenorhabditis elegans] ref|NP_504366.1| Serpentine Receptor, class AB (class A-like) family member (srab-1) [Caenorhabditis elegans] 0.0
blast AAF98598 Udp-glucuronosyltransferase protein 63 [Caenorhabditis elegans] ref|NP_504369.1| C04F5.7 [Caenorhabditis elegans] 0.0
blast CAE64076 Hypothetical protein CBG08680 [Caenorhabditis briggsae] 0.0
blast AAR85910 Serpentine receptor, class ab (class a-like) protein 2 [Caenorhabditis elegans] ref|NP_504367.1| Serpentine Receptor, class AB (class A-like) family member (srab-2) [Caenorhabditis elegans] pir||T33768 hypothetical protein C04F5.5 - Caenorhabditis elegans 1.0E-129
blast CAE64073 Hypothetical protein CBG08675 [Caenorhabditis briggsae] 1.0E-127
Protein Domains
Database ID Description E-Value
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 8.6E-17
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504366.1 7 22-44,57-76,108-127,140-159,184-206,241-263,273-292
C04F5.4 7 22-44,57-76,108-127,140-159,184-206,241-263,273-292
GENEFINDER00000034414 20 561-583,596-615,645-667,680-699,724-746,781-803,813-835,937-959,969-988,1053-1075,1097-1119,1154-1176,1186-1208,1274-1296,1311-1330,1395-1414,1439-1461,1496-1518,1528-1547,1616-1638
Sequence
Target Sequence 
>C. ELEGANS:183347_AT
aacatttttcatatttcccttgctctatttctttttacaattcagtcatctgaaaaggtc
ggcggcgatataatctattattgttggatgtcatctaccggaaatcgatatatgctaaac
ctacctattttcgtaattgttttcagtcaattgataactattcccgcgttattatatctt
ctcagaaagaatgagaaatttcgcgaagcttccttgcaaaaacgatcgacattatctcaa
agatatcaactatcacaaaacctgcaaacattgacaaaattccgaatagttagcacagtg
acatggatttatgttacttacaatgcagcagcgacgttcggagttcatttttttttgaaa
tcaatgtcatcagcggggcaatttgcaattatagaaatcgttcactgccttcctctctac
tatttgatactt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACATTTTTCATATTTCCCTTGCTC 226 139 448 Antisense
TCCCTTGCTCTATTTCTTTTTACAA 175 599 463 Antisense
CAGTCATCTGAAAAGGTCGGCGGCG 99 83 490 Antisense
ATATGCTAAACCTACCTATTTTCGT 254 21 557 Antisense
ATTCCCGCGTTATTATATCTTCTCA 403 9 607 Antisense
GAGAAATTTCGCGAAGCTTCCTTGC 487 391 640 Antisense
GCTTCCTTGCAAAAACGATCGACAT 655 303 655 Antisense
GCAGCAGCGACGTTCGGAGTTCATT 413 313 772 Antisense
CAATGTCATCAGCGGGGCAATTTGC 166 183 809 Antisense
TATAGAAATCGTTCACTGCCTTCCT 417 659 837 Antisense
CCTTCCTCTCTACTATTTGATACTT 630 269 855 Antisense
Sequence Source Affymetrix Proprietary Database